RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 C14orf177Q52M58 125 aa8.01□□□□□ -1.13
SDC3-204ENST00000487984 SUMO4Q6EEV6 95 aa8.01□□□□□ -1.13
SDC3-204ENST00000487984 TRBV25-1A0A075B6N4 114 aa8□□□□□ -1.13
SDC3-204ENST00000487984 USP17L23D6RBM5 183 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BKO60814 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BJP06899 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BOP23527 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BBP33778 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BDP58876 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BCP62807 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 MIAQ16674 131 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST2H2BEQ16778 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 IQCJQ1A5X6 159 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST2H2BFQ5QNW6 126 aaPredicted RBP8□□□□□ -1.13
SDC3-204ENST00000487984 CLPSL2Q6UWE3 100 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BHQ93079 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BNQ99877 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 HIST1H2BMQ99879 126 aa8□□□□□ -1.13
SDC3-204ENST00000487984 CHAC1Q9BUX1 264 aa8□□□□□ -1.13
SDC3-204ENST00000487984 PRR34Q9NV39 138 aa8□□□□□ -1.13
SDC3-204ENST00000487984 TMA7Q9Y2S6 64 aaKnown RBP8□□□□□ -1.13
SDC3-204ENST00000487984 IGHV1-24A0A0C4DH33 117 aa7.99□□□□□ -1.13
SDC3-204ENST00000487984 BAGE3Q86Y29 109 aa7.99□□□□□ -1.13
SDC3-204ENST00000487984 LINC00269Q8N2A0 174 aa7.99□□□□□ -1.13
SDC3-204ENST00000487984 C20orf78Q9BR46 151 aa7.99□□□□□ -1.13
SDC3-204ENST00000487984 MAP1LC3AQ9H492 121 aa7.99□□□□□ -1.13
SDC3-204ENST00000487984 TNFRSF6BO95407 300 aa7.98□□□□□ -1.13
SDC3-204ENST00000487984 NCR2O95944 276 aa7.98□□□□□ -1.13
SDC3-204ENST00000487984 KRTAP26-1Q6PEX3 210 aa7.98□□□□□ -1.13
SDC3-204ENST00000487984 PRSS3P2Q8NHM4 247 aa7.98□□□□□ -1.13
SDC3-204ENST00000487984 CIRBP-AS1Q8TBR5 109 aa7.98□□□□□ -1.13
SDC3-204ENST00000487984 NIT2Q9NQR4 276 aa7.98□□□□□ -1.13
SDC3-204ENST00000487984 TRAV26-2A0A0B4J265 109 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 SMKR1H3BMG3 65 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 PRSS1P07477 247 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 PMCHP20382 165 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 NDUFA6P56556 154 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 C18orf32Q8TCD1 76 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 ST20Q9HBF5 79 aa7.97□□□□□ -1.13
SDC3-204ENST00000487984 NXT2Q9NPJ8 142 aaKnown RBP7.97□□□□□ -1.13
SDC3-204ENST00000487984 TRBV6-5A0A0K0K1A5 114 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 PRSS47A8MTI9 375 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 TCAPO15273 167 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 NPYP01303 97 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 KRTAP10-4P60372 401 aaPredicted RBP7.96□□□□□ -1.14
SDC3-204ENST00000487984 SUMO2P61956 95 aaKnown RBP7.96□□□□□ -1.14
SDC3-204ENST00000487984 REG3AQ06141 175 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 FA2HQ7L5A8 372 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 C20orf203Q8NBC4 194 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 TMEM243Q9BU79 118 aa7.96□□□□□ -1.14
SDC3-204ENST00000487984 IGLV10-54A0A075B6I4 117 aa7.95□□□□□ -1.14
SDC3-204ENST00000487984 J3QL48 77 aa7.95□□□□□ -1.14
SDC3-204ENST00000487984 RPL32P62910 135 aaKnown RBP7.95□□□□□ -1.14
SDC3-204ENST00000487984 COA6Q5JTJ3 125 aaKnown RBP7.95□□□□□ -1.14
SDC3-204ENST00000487984 NRACQ8N912 160 aa7.95□□□□□ -1.14
SDC3-204ENST00000487984 DEFB104AQ8WTQ1 72 aa7.95□□□□□ -1.14
SDC3-204ENST00000487984 CHCHD1Q96BP2 118 aaKnown RBP7.95□□□□□ -1.14
SDC3-204ENST00000487984 IGLV4-60A0A075B6I1 120 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 LOC389332A0A1B0GUA5 103 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 A0A1B0GUV1 79 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 K7EMI3 77 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 VCYO14598 125 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 LINC00614P0C842 121 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 DGAT2L7PQ6IED9 249 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 Q8N8P6 123 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 KIR2DL4Q99706 377 aa7.94□□□□□ -1.14
SDC3-204ENST00000487984 SDHAF1A6NFY7 115 aa7.93□□□□□ -1.14
SDC3-204ENST00000487984 KRTAP29-1A8MX34 341 aaPredicted RBP7.93□□□□□ -1.14
SDC3-204ENST00000487984 HSBP1O75506 76 aa7.93□□□□□ -1.14
SDC3-204ENST00000487984 G0S2P27469 103 aa7.93□□□□□ -1.14
SDC3-204ENST00000487984 RNASEKQ6P5S7 137 aaKnown RBP7.93□□□□□ -1.14
SDC3-204ENST00000487984 C9orf163Q8N9P6 203 aa7.93□□□□□ -1.14
SDC3-204ENST00000487984 RPL39LQ96EH5 51 aaKnown RBP7.93□□□□□ -1.14
SDC3-204ENST00000487984 SMIM2Q9BVW6 85 aa7.93□□□□□ -1.14
SDC3-204ENST00000487984 AP5S1Q9NUS5 200 aa7.93□□□□□ -1.14
SDC3-204ENST00000487984 TRAV8-4A0A0B4J246 113 aa7.92□□□□□ -1.14
SDC3-204ENST00000487984 GAS8-AS1O95177 125 aa7.92□□□□□ -1.14
SDC3-204ENST00000487984 S100A2P29034 98 aa7.92□□□□□ -1.14
SDC3-204ENST00000487984 IFI27P40305 119 aaPredicted RBP7.92□□□□□ -1.14
SDC3-204ENST00000487984 AMTP48728 403 aa7.92□□□□□ -1.14
SDC3-204ENST00000487984 COTL1Q14019 142 aa7.92□□□□□ -1.14
SDC3-204ENST00000487984 TRBV27A0A0K0K1C4 114 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 LINC01549A6NIU2 74 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 I3L3M4 83 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 UBE2L6O14933 153 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 SERF1AO75920 110 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 ESDP10768 282 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 FCER1GP30273 86 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 POLR2KP53803 58 aaKnown RBP7.91□□□□□ -1.14
SDC3-204ENST00000487984 SNRPEP62304 92 aaKnown RBP7.91□□□□□ -1.14
SDC3-204ENST00000487984 ORMDL2Q53FV1 153 aa7.91□□□□□ -1.14
SDC3-204ENST00000487984 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.91□□□□□ -1.14
SDC3-204ENST00000487984 LRP1Q07954 4544 aaKnown RBP7.91□□□□□ -1.14
SDC3-204ENST00000487984 hDV102S1A0JD36 115 aa7.9□□□□□ -1.14
SDC3-204ENST00000487984 C5orf52A6NGY3 159 aa7.9□□□□□ -1.14
SDC3-204ENST00000487984 PANO1I0J062 215 aa7.9□□□□□ -1.14
SDC3-204ENST00000487984 CNBPP62633 177 aaKnown RBP7.9□□□□□ -1.14
SDC3-204ENST00000487984 SDIM1Q6ZPB5 146 aa7.9□□□□□ -1.14
SDC3-204ENST00000487984 LINC01546A6NGU7 62 aa7.89□□□□□ -1.15
SDC3-204ENST00000487984 TMEM18Q96B42 140 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms