RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 RPL7P18124 248 aaKnown RBP1.68□□□□□ -2.14
USP48-209ENST00000487880 PSMB8P28062 276 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 IFI27P40305 119 aaPredicted RBP1.68□□□□□ -2.14
USP48-209ENST00000487880 TSPEAR-AS2P59090 65 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 PRCDQ00LT1 54 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 ATXN8Q156A1 80 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 C10orf113Q5VZT2 155 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 MYO7BQ6PIF6 2116 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 LINC00643Q86TS7 51 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 NDUFA11Q86Y39 141 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 Q8N8P6 123 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 PLEKHB2Q96CS7 222 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 ODF3Q96PU9 254 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 DYNLRB1Q9NP97 96 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 OTORQ9NRC9 128 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 LINC00527Q9UJ94 153 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 NCKAP5O14513 1909 aa1.68□□□□□ -2.14
USP48-209ENST00000487880 LOC107984156A0A0G2JMH3 177 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 C10orf142B7Z368 130 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 D6R8Y8 96 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 BCE1O60756 84 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 TRACP01848 142 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 ARMS2P0C7Q2 107 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 COX6B1P14854 86 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 CKS2P33552 79 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 ZNF137PP52743 207 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 HIST1H4AP62805 103 aaKnown RBP1.67□□□□□ -2.14
USP48-209ENST00000487880 MRPS36P82909 103 aaKnown RBP1.67□□□□□ -2.14
USP48-209ENST00000487880 ERHP84090 104 aaKnown RBP1.67□□□□□ -2.14
USP48-209ENST00000487880 PDE6HQ13956 83 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.67□□□□□ -2.14
USP48-209ENST00000487880 C5orf38Q86SI9 138 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 Q86TA4 180 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 ARL17AQ8IVW1 177 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 PRO1854Q9UHT4 67 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 GOLGA4Q13439 2230 aaKnown RBP1.67□□□□□ -2.14
USP48-209ENST00000487880 SPAG17Q6Q759 2223 aa1.67□□□□□ -2.14
USP48-209ENST00000487880 TNRC6BQ9UPQ9 1833 aaKnown RBP1.66□□□□□ -2.14
USP48-209ENST00000487880 TRAV8-1A0A0A6YYK1 113 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 A0A0J9YY99 117 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 FAM236AA0A1B0GUQ0 79 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 FAM236BA0A1B0GV22 79 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 TINCRA0A1B0GVN0 87 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 NDUFC2O95298 119 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 PPP1R17O96001 155 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 IGHV3-30P01768 117 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 IGHV3-33P01772 117 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 COX6CP09669 75 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 IGHV3-30-5P0DP03 117 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 LINC00313P59037 77 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 CCL8P80075 99 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 TPRXLQ17RH7 258 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 FAM201AQ5SY85 155 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 Q5XG85 94 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 PATE2Q6UY27 113 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 LINC00322Q6ZN03 302 aaPredicted RBP1.66□□□□□ -2.14
USP48-209ENST00000487880 AAED1Q7RTV5 226 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 LINC00305Q7Z4B0 112 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 DAND5Q8N907 189 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 DCANP1Q8TF63 244 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 DPH3Q96FX2 82 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 AGPAT4-IT1Q9H0P7 198 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 MRPL35Q9NZE8 188 aaKnown RBP1.66□□□□□ -2.14
USP48-209ENST00000487880 LAMTOR3Q9UHA4 124 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 EML6Q6ZMW3 1958 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 PCDH15Q96QU1 1955 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 PTPRSQ13332 1948 aa1.66□□□□□ -2.14
USP48-209ENST00000487880 EXPH5Q8NEV8 1989 aa1.65□□□□□ -2.14
USP48-209ENST00000487880 TANC2Q9HCD6 1990 aa1.65□□□□□ -2.14
USP48-209ENST00000487880 KMT2BQ9UMN6 2715 aaPredicted RBP1.65□□□□□ -2.15
USP48-209ENST00000487880 USF3Q68DE3 2245 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 TRAV12-2A0A075B6T6 113 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 TRAV13-1A0A0B4J241 112 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 LOC107984640A0A0U1RRK4 108 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 RBAKDNA6NC62 111 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 C11orf86A6NJI1 115 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 ZNF815PA8K554 130 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 IQCF6A8MYZ5 107 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 OOSP1A8MZH6 123 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 H3BPC8 53 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 H3BVH4 76 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 M0R381 172 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 PYYP10082 97 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 COX6A1P12074 109 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 CD24P25063 80 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 EFNA4P52798 201 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 ATP5EP56381 51 aaPredicted RBP1.65□□□□□ -2.15
USP48-209ENST00000487880 GNG5P63218 68 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 DEFB110Q30KQ9 67 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 LYZL1Q6UWQ5 148 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 C2orf82Q6UX34 121 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 SCGB1D4Q6XE38 83 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 GOLT1AQ6ZVE7 132 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 SERP2Q8N6R1 65 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 TMEM167AQ8TBQ9 72 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 TMEM263Q8WUH6 116 aaKnown RBP1.65□□□□□ -2.15
USP48-209ENST00000487880 TOMM6Q96B49 74 aa1.65□□□□□ -2.15
USP48-209ENST00000487880 ZNF625Q96I27 306 aaPredicted RBP1.65□□□□□ -2.15
USP48-209ENST00000487880 HEATR1Q9H583 2144 aaKnown RBP1.65□□□□□ -2.15
USP48-209ENST00000487880 NDUFA4L2Q9NRX3 87 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms