RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 GYPEP15421 78 aa9.91□□□□□ -0.82
CUX1-209ENST00000487284 NANOS2P60321 138 aaKnown RBP9.91□□□□□ -0.82
CUX1-209ENST00000487284 MRPS36P82909 103 aaKnown RBP9.91□□□□□ -0.82
CUX1-209ENST00000487284 CEMP1Q6PRD7 247 aaPredicted RBP9.91□□□□□ -0.82
CUX1-209ENST00000487284 MRPL52Q86TS9 123 aaKnown RBP9.91□□□□□ -0.82
CUX1-209ENST00000487284 C11orf45Q8TAV5 145 aa9.91□□□□□ -0.82
CUX1-209ENST00000487284 VCX2Q9H322 139 aa9.91□□□□□ -0.82
CUX1-209ENST00000487284 PAX4O43316 350 aa9.9□□□□□ -0.82
CUX1-209ENST00000487284 FGF6P10767 208 aa9.9□□□□□ -0.82
CUX1-209ENST00000487284 HNRNPA3P51991 378 aaKnown RBP9.9□□□□□ -0.82
CUX1-209ENST00000487284 TMEM97Q5BJF2 176 aa9.9□□□□□ -0.82
CUX1-209ENST00000487284 NFE4Q86UQ8 179 aa9.9□□□□□ -0.82
CUX1-209ENST00000487284 TMEM243Q9BU79 118 aa9.9□□□□□ -0.82
CUX1-209ENST00000487284 CSDC2Q9Y534 153 aaKnown RBP9.9□□□□□ -0.82
CUX1-209ENST00000487284 TRBV25-1A0A075B6N4 114 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 IGKV2D-26A0A0A0MRZ7 120 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 H7C423 109 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 SMAGPQ0VAQ4 97 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 Q6ZTC4 211 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 Q6ZUT4 128 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 VSIG2Q96IQ7 327 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 TP73-AS1Q9UF72 201 aa9.89□□□□□ -0.83
CUX1-209ENST00000487284 MRPS16Q9Y3D3 137 aaKnown RBP9.89□□□□□ -0.83
CUX1-209ENST00000487284 TRBV6-8A0A0A6YYG3 113 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 DLEU1O43261 78 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 TCTAP57738 103 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 BOD1L2Q8IYS8 172 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 ATP6V0E2Q8NHE4 81 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 HTN3P15516 51 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 NMUP48645 174 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 CHAC1Q9BUX1 264 aa9.88□□□□□ -0.83
CUX1-209ENST00000487284 CTAG1AP78358 180 aa9.87□□□□□ -0.83
CUX1-209ENST00000487284 DGAT2L7PQ6IED9 249 aa9.87□□□□□ -0.83
CUX1-209ENST00000487284 F5H768 121 aa9.86□□□□□ -0.83
CUX1-209ENST00000487284 RNASE13Q5GAN3 156 aaKnown RBP9.86□□□□□ -0.83
CUX1-209ENST00000487284 PCP2Q8IVA1 136 aa9.86□□□□□ -0.83
CUX1-209ENST00000487284 TRAV26-1A0A087WT03 109 aa9.85□□□□□ -0.83
CUX1-209ENST00000487284 A0A0J9YXV3 536 aa9.85□□□□□ -0.83
CUX1-209ENST00000487284 E9PLD3 99 aa9.85□□□□□ -0.83
CUX1-209ENST00000487284 UBE2L6O14933 153 aa9.85□□□□□ -0.83
CUX1-209ENST00000487284 C2orf91Q6ZV80 131 aa9.85□□□□□ -0.83
CUX1-209ENST00000487284 C2orf88Q9BSF0 95 aa9.85□□□□□ -0.83
CUX1-209ENST00000487284 A0A0J9YY99 117 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 ZNF25P17030 456 aaPredicted RBP9.84□□□□□ -0.83
CUX1-209ENST00000487284 OR5A1Q8NGJ0 315 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 SNHG12Q9BXW3 62 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 M0R143 59 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 EREGO14944 169 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 ZNF22P17026 224 aaPredicted RBP9.84□□□□□ -0.83
CUX1-209ENST00000487284 UBE2D1P51668 147 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 HERVK_113P61574 105 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 TMEM170BQ5T4T1 132 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 AMMECR1LQ6DCA0 310 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 CDC42SE2Q9NRR3 84 aa9.84□□□□□ -0.83
CUX1-209ENST00000487284 TINCRA0A1B0GVN0 87 aa9.83□□□□□ -0.84
CUX1-209ENST00000487284 SIVA1O15304 175 aa9.83□□□□□ -0.84
CUX1-209ENST00000487284 DNAH7Q8WXX0 4024 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 DEFB131BA0A096LNP1 70 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 GAGE6Q13070 117 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 MRPL23Q16540 153 aaKnown RBP9.82□□□□□ -0.84
CUX1-209ENST00000487284 FAM19A3Q7Z5A8 133 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 TMEM101Q96IK0 257 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 CHCHD5Q9BSY4 110 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 TTTY13Q9BZ97 58 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 ICOSQ9Y6W8 199 aa9.82□□□□□ -0.84
CUX1-209ENST00000487284 TRAV10A0A0B4J240 114 aa9.81□□□□□ -0.84
CUX1-209ENST00000487284 TMEM223A0PJW6 202 aa9.81□□□□□ -0.84
CUX1-209ENST00000487284 H3BNG1 76 aa9.81□□□□□ -0.84
CUX1-209ENST00000487284 SH2D6Q7Z4S9 175 aa9.81□□□□□ -0.84
CUX1-209ENST00000487284 A0A096LPF7 62 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 TRAV8-6A0A0B4J262 113 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 LBHQ53QV2 105 aaPredicted RBP9.8□□□□□ -0.84
CUX1-209ENST00000487284 MAPKAPK5-AS1Q8N8E1 139 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 CSMD3Q7Z407 3707 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 IGLV5-45A0A087WSX0 123 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 TIRAPP58753 221 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 HIGD1BQ9P298 99 aa9.8□□□□□ -0.84
CUX1-209ENST00000487284 DYNC2H1Q8NCM8 4307 aaKnown RBP9.79□□□□□ -0.84
CUX1-209ENST00000487284 IGLV4-60A0A075B6I1 120 aa9.78□□□□□ -0.84
CUX1-209ENST00000487284 A0A1B0GUV1 79 aa9.78□□□□□ -0.84
CUX1-209ENST00000487284 SEC11AP67812 179 aa9.78□□□□□ -0.84
CUX1-209ENST00000487284 LINC00242Q5T6M2 205 aa9.78□□□□□ -0.84
CUX1-209ENST00000487284 GEMIN7Q9H840 131 aaKnown RBP9.78□□□□□ -0.84
CUX1-209ENST00000487284 MYMXA0A1B0GTQ4 84 aa9.77□□□□□ -0.85
CUX1-209ENST00000487284 LEPROTO15243 131 aa9.77□□□□□ -0.85
CUX1-209ENST00000487284 TSPEAR-AS2P59090 65 aa9.77□□□□□ -0.85
CUX1-209ENST00000487284 HERVK_113P63121 156 aa9.77□□□□□ -0.85
CUX1-209ENST00000487284 MPV17L2Q567V2 206 aa9.77□□□□□ -0.85
CUX1-209ENST00000487284 HINT1P49773 126 aaPredicted RBP9.76□□□□□ -0.85
CUX1-209ENST00000487284 LINC00469Q8N7U9 141 aa9.76□□□□□ -0.85
CUX1-209ENST00000487284 J3QQQ9 107 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 RBX1P62877 108 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 COX6A2Q02221 97 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 HSD52Q0P140 79 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 PLEKHB2Q96CS7 222 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 CDKN2A-AS1Q9UH64 79 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 PLECQ15149 4684 aaKnown RBP9.75□□□□□ -0.85
CUX1-209ENST00000487284 TRAV13-1A0A0B4J241 112 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 ZNF815PA8K554 130 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 BATFQ16520 125 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms