RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 FAM19A4Q96LR4 140 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 LINC00467Q9BRT7 94 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 ZFP36P26651 326 aaKnown RBP4.57□□□□□ -1.68
VPS13D-209ENST00000487188 PROK1P58294 105 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 LINC00158P58513 81 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 Q8N2B8 174 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 C2orf48Q96LS8 159 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 WIPF1O43516 503 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 RNASE1P07998 156 aaKnown RBP4.57□□□□□ -1.68
VPS13D-209ENST00000487188 PIK3CD-AS1Q5SR53 167 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 HIST2H2BCQ6DN03 193 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 HIST2H2BDQ6DRA6 164 aa4.57□□□□□ -1.68
VPS13D-209ENST00000487188 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.57□□□□□ -1.684e-7■■■■□ 24
VPS13D-209ENST00000487188 IGKV3OR2-268A0A0C4DH90 116 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 IGF2-ASQ6U949 168 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 SIRPDQ9H106 197 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 UBE2D4Q9Y2X8 147 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 ATRXP46100 2492 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 TRAV23DV6A0A075B6W5 121 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 LECT2O14960 151 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 ZNF415Q09FC8 603 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 C20orf197Q8N268 126 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 MRAPQ8TCY5 172 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 FAM236DA0A1B0GTK5 79 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 FAM236CP0DP71 79 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 FAM218AQ96MZ4 157 aa4.56□□□□□ -1.68
VPS13D-209ENST00000487188 UBE2L6O14933 153 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 PAX4O43316 350 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 BRD3OSQ6XYD6 125 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 SND1-IT1Q9HBX3 110 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 IGF2RP11717 2491 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 EPG5Q9HCE0 2579 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 NCR3O14931 201 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 NDUFC2O95298 119 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 IGHG2P01859 326 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 GRNP28799 593 aaKnown RBP4.55□□□□□ -1.68
VPS13D-209ENST00000487188 MGAQ8IWI9 3026 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 PFN2P35080 140 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 LINC00846Q9NV44 126 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 FASNP49327 2511 aaKnown RBP4.55□□□□□ -1.68
VPS13D-209ENST00000487188 H0YGX0 51 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 CCL21O00585 134 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 PF4P02776 101 aa4.55□□□□□ -1.68
VPS13D-209ENST00000487188 RPL36AP83881 106 aaKnown RBP4.55□□□□□ -1.68
VPS13D-209ENST00000487188 RPL36ALQ969Q0 106 aaKnown RBP4.55□□□□□ -1.68
VPS13D-209ENST00000487188 SOSTDC1Q6X4U4 206 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 CYSTM1Q9H1C7 97 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 NOTCH3Q9UM47 2321 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 PIEZO2Q9H5I5 2752 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 PKD1L2Q7Z442 2459 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 EDN2P20800 178 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 MIR7-3HGQ8N6C7 128 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 CHCHD7Q9BUK0 85 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 ORMDL1Q9P0S3 153 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 H3BUX3 64 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 UBL5Q9BZL1 73 aa4.54□□□□□ -1.68
VPS13D-209ENST00000487188 A0A087WYN8 130 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 H3BUA1 57 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 CHD6Q8TD26 2715 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 IGHV3OR16-12A0A075B7B8 117 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 SLPIP03973 132 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 RPL28P46779 137 aaKnown RBP4.53□□□□□ -1.68
VPS13D-209ENST00000487188 COX6A2Q02221 97 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 WFDC9Q8NEX5 89 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 PKIGQ9Y2B9 76 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 PSMB8P28062 276 aa4.53□□□□□ -1.68
VPS13D-209ENST00000487188 ANKRD11Q6UB99 2663 aaPredicted RBP4.53□□□□□ -1.69
VPS13D-209ENST00000487188 SMIM1B2RUZ4 78 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 HILS1P60008 231 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 KLK9Q2XQG4 91 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 C2CD3Q4AC94 2353 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 NDUFC2-KCTD14E9PQ53 114 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 K7EMT4 169 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 LINC00242Q5T6M2 205 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 ENHOQ6UWT2 76 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 SMIM11BQ8TCY0 68 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 BPESC1Q9GZL8 116 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 BOD1L1Q8NFC6 3051 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 IGSF10Q6WRI0 2623 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 DEFB131AP59861 70 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 KHDC1LQ5JSQ8 128 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 ATP5EP2Q5VTU8 51 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 C11orf68Q9H3H3 251 aaKnown RBP4.52□□□□□ -1.69
VPS13D-209ENST00000487188 PRORYQ9H606 182 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 KALRNO60229 2985 aa4.52□□□□□ -1.69
VPS13D-209ENST00000487188 IGHV3-53P01767 116 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 RBM3P98179 157 aaKnown RBP4.51□□□□□ -1.69
VPS13D-209ENST00000487188 FHL2Q14192 279 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 LINC01561Q8N1V8 128 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 BEAN1Q3B7T3 259 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 COX7B2Q8TF08 81 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 IGLV5-39A0A0G2JS06 123 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 OXTP01178 125 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 BLCAPP62952 87 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 PIMREGQ9BSJ6 248 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 UPK3BQ9BT76 320 aa4.51□□□□□ -1.69
VPS13D-209ENST00000487188 IGLV5-45A0A087WSX0 123 aa4.5□□□□□ -1.69
VPS13D-209ENST00000487188 TRGV1A0A0A0MS02 117 aa4.5□□□□□ -1.69
VPS13D-209ENST00000487188 K7EQG2 157 aa4.5□□□□□ -1.69
VPS13D-209ENST00000487188 LINC00337Q8N6G1 96 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms