RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CLPSL2Q6UWE3 100 aa10.48□□□□□ -0.73
UPF3A-208ENST00000484246 PRELID3AQ96N28 172 aa10.48□□□□□ -0.73
UPF3A-208ENST00000484246 CSDC2Q9Y534 153 aaKnown RBP10.48□□□□□ -0.73
UPF3A-208ENST00000484246 DNAH5Q8TE73 4624 aa10.48□□□□□ -0.73
UPF3A-208ENST00000484246 ABCA13Q86UQ4 5058 aa10.47□□□□□ -0.73
UPF3A-208ENST00000484246 NDUFA5Q16718 116 aa10.47□□□□□ -0.73
UPF3A-208ENST00000484246 CDK2AP2O75956 126 aa10.46□□□□□ -0.73
UPF3A-208ENST00000484246 SMAGPQ0VAQ4 97 aa10.46□□□□□ -0.73
UPF3A-208ENST00000484246 COX19Q49B96 90 aa10.46□□□□□ -0.73
UPF3A-208ENST00000484246 RNASEKQ6P5S7 137 aaKnown RBP10.46□□□□□ -0.73
UPF3A-208ENST00000484246 SVBPQ8N300 66 aa10.46□□□□□ -0.73
UPF3A-208ENST00000484246 BAALCQ8WXS3 180 aa10.46□□□□□ -0.73
UPF3A-208ENST00000484246 TIMM21Q9BVV7 248 aa10.46□□□□□ -0.73
UPF3A-208ENST00000484246 HLA-DQA1P01909 254 aa10.45□□□□□ -0.74
UPF3A-208ENST00000484246 C14orf177Q52M58 125 aa10.45□□□□□ -0.74
UPF3A-208ENST00000484246 OR5A1Q8NGJ0 315 aa10.45□□□□□ -0.74
UPF3A-208ENST00000484246 TMEM101Q96IK0 257 aa10.45□□□□□ -0.74
UPF3A-208ENST00000484246 RPS10P5Q9NQ39 176 aa10.45□□□□□ -0.74
UPF3A-208ENST00000484246 SNAPINO95295 136 aa10.44□□□□□ -0.74
UPF3A-208ENST00000484246 TMEM18Q96B42 140 aa10.44□□□□□ -0.74
UPF3A-208ENST00000484246 GNB1LQ9BYB4 327 aa10.44□□□□□ -0.74
UPF3A-208ENST00000484246 MAP1LC3AQ9H492 121 aa10.44□□□□□ -0.74
UPF3A-208ENST00000484246 CDC42SE2Q9NRR3 84 aa10.44□□□□□ -0.74
UPF3A-208ENST00000484246 UBE2D4Q9Y2X8 147 aa10.44□□□□□ -0.74
UPF3A-208ENST00000484246 IGLV5-52A0A0A0MRZ9 124 aa10.43□□□□□ -0.74
UPF3A-208ENST00000484246 LECT2O14960 151 aa10.43□□□□□ -0.74
UPF3A-208ENST00000484246 APOC3P02656 99 aa10.43□□□□□ -0.74
UPF3A-208ENST00000484246 MT-ND6P03923 174 aa10.42□□□□□ -0.74
UPF3A-208ENST00000484246 FUSP35637 526 aaKnown RBP eCLIP10.42□□□□□ -0.74
UPF3A-208ENST00000484246 IGLV10-54A0A075B6I4 117 aa10.41□□□□□ -0.74
UPF3A-208ENST00000484246 USP17L23D6RBM5 183 aa10.41□□□□□ -0.74
UPF3A-208ENST00000484246 K7EMI3 77 aa10.41□□□□□ -0.74
UPF3A-208ENST00000484246 GCSHP23434 173 aa10.41□□□□□ -0.74
UPF3A-208ENST00000484246 ZNF664Q8N3J9 261 aa10.41□□□□□ -0.74
UPF3A-208ENST00000484246 SPANXA1Q9NS26 97 aa10.41□□□□□ -0.74
UPF3A-208ENST00000484246 KRTAP10-1P60331 282 aa10.4□□□□□ -0.74
UPF3A-208ENST00000484246 Q8N8P6 123 aa10.4□□□□□ -0.74
UPF3A-208ENST00000484246 APOBP04114 4563 aaKnown RBP10.4□□□□□ -0.74
UPF3A-208ENST00000484246 LINC00959A0A1B0GUT2 108 aa10.39□□□□□ -0.75
UPF3A-208ENST00000484246 RAB5AP20339 215 aa10.39□□□□□ -0.75
UPF3A-208ENST00000484246 DGAT2L7PQ6IED9 249 aa10.39□□□□□ -0.75
UPF3A-208ENST00000484246 CHCHD10Q8WYQ3 142 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-208ENST00000484246 NXT2Q9NPJ8 142 aaKnown RBP10.39□□□□□ -0.75
UPF3A-208ENST00000484246 CCL25O15444 150 aa10.38□□□□□ -0.75
UPF3A-208ENST00000484246 MRPS36P82909 103 aaKnown RBP10.38□□□□□ -0.75
UPF3A-208ENST00000484246 HSPG2P98160 4391 aa10.37□□□□□ -0.75
UPF3A-208ENST00000484246 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-208ENST00000484246 GAGE12HA6NDE8 117 aa10.37□□□□□ -0.75
UPF3A-208ENST00000484246 RPL39P62891 51 aaKnown RBP10.37□□□□□ -0.75
UPF3A-208ENST00000484246 Q6ZUT4 128 aa10.37□□□□□ -0.75
UPF3A-208ENST00000484246 PYGO1Q9Y3Y4 419 aa10.37□□□□□ -0.75
UPF3A-208ENST00000484246 IGKV3OR2-268A0A0C4DH90 116 aa10.36□□□□□ -0.75
UPF3A-208ENST00000484246 LOC389332A0A1B0GUA5 103 aa10.36□□□□□ -0.75
UPF3A-208ENST00000484246 PRSS1P07477 247 aa10.36□□□□□ -0.75
UPF3A-208ENST00000484246 FOXI1Q12951 378 aa10.36□□□□□ -0.75
UPF3A-208ENST00000484246 ORMDL2Q53FV1 153 aa10.36□□□□□ -0.75
UPF3A-208ENST00000484246 FAM104AQ969W3 186 aa10.36□□□□□ -0.75
UPF3A-208ENST00000484246 SS18Q15532 418 aa10.35□□□□□ -0.75
UPF3A-208ENST00000484246 KIAA1644Q3SXP7 199 aa10.35□□□□□ -0.75
UPF3A-208ENST00000484246 Q6ZSA8 131 aa10.35□□□□□ -0.75
UPF3A-208ENST00000484246 YPEL4Q96NS1 127 aa10.35□□□□□ -0.75
UPF3A-208ENST00000484246 ALKBH7Q9BT30 221 aaPredicted RBP10.35□□□□□ -0.75
UPF3A-208ENST00000484246 TGIF2-C20orf24A0A0A6YYL0 155 aa10.34□□□□□ -0.75
UPF3A-208ENST00000484246 LINC01546A6NGU7 62 aa10.34□□□□□ -0.75
UPF3A-208ENST00000484246 NPSP0C0P6 89 aa10.34□□□□□ -0.75
UPF3A-208ENST00000484246 CNBPP62633 177 aaKnown RBP10.34□□□□□ -0.75
UPF3A-208ENST00000484246 CFAP161Q6P656 301 aa10.34□□□□□ -0.75
UPF3A-208ENST00000484246 CD164L2Q6UWJ8 174 aa10.34□□□□□ -0.75
UPF3A-208ENST00000484246 C15orf56Q8N910 161 aa10.34□□□□□ -0.75
UPF3A-208ENST00000484246 MRPL18Q9H0U6 180 aaKnown RBP10.34□□□□□ -0.75
UPF3A-208ENST00000484246 C1orf196B1AJZ1 125 aa10.33□□□□□ -0.76
UPF3A-208ENST00000484246 IFI27P40305 119 aaPredicted RBP10.33□□□□□ -0.76
UPF3A-208ENST00000484246 XCL1P47992 114 aa10.33□□□□□ -0.76
UPF3A-208ENST00000484246 CYSLTR1Q9Y271 337 aa10.33□□□□□ -0.76
UPF3A-208ENST00000484246 GVQW2A0A096LPI5 108 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-208ENST00000484246 G0S2P27469 103 aa10.32□□□□□ -0.76
UPF3A-208ENST00000484246 XGP55808 180 aa10.32□□□□□ -0.76
UPF3A-208ENST00000484246 SLC7A5P1Q8MH63 180 aa10.32□□□□□ -0.76
UPF3A-208ENST00000484246 IGLV4-3A0A075B6K6 122 aa10.31□□□□□ -0.76
UPF3A-208ENST00000484246 FABP9Q0Z7S8 132 aa10.31□□□□□ -0.76
UPF3A-208ENST00000484246 RNASE13Q5GAN3 156 aaKnown RBP10.31□□□□□ -0.76
UPF3A-208ENST00000484246 C2orf66Q6UXQ4 117 aa10.31□□□□□ -0.76
UPF3A-208ENST00000484246 DNAH8Q96JB1 4490 aa10.3□□□□□ -0.76
UPF3A-208ENST00000484246 hDV102S1A0JD36 115 aa10.3□□□□□ -0.76
UPF3A-208ENST00000484246 C9orf163Q8N9P6 203 aa10.3□□□□□ -0.76
UPF3A-208ENST00000484246 TRAV13-1A0A0B4J241 112 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 IGHV1-58A0A0C4DH39 117 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 LINC01549A6NIU2 74 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 IGIPA6NJ69 53 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 OPRPNQ99935 248 aaPredicted RBP10.29□□□□□ -0.76
UPF3A-208ENST00000484246 SMCO4Q9NRQ5 59 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 AP5S1Q9NUS5 200 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 TRAPPC1Q9Y5R8 145 aa10.29□□□□□ -0.76
UPF3A-208ENST00000484246 IFITM10A6NMD0 228 aa10.28□□□□□ -0.76
UPF3A-208ENST00000484246 PRSS3P2Q8NHM4 247 aa10.28□□□□□ -0.76
UPF3A-208ENST00000484246 TMEM141Q96I45 108 aa10.28□□□□□ -0.76
UPF3A-208ENST00000484246 TIMM17AQ99595 171 aa10.28□□□□□ -0.76
UPF3A-208ENST00000484246 FAM30AQ9NZY2 134 aa10.28□□□□□ -0.76
UPF3A-208ENST00000484246 COX7A2LO14548 114 aa10.27□□□□□ -0.77
UPF3A-208ENST00000484246 SLPIP03973 132 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms