RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 MRPL35Q9NZE8 188 aaKnown RBP3.83□□□□□ -1.8
COL17A1-206ENST00000483876 TRGV4A0A0C4DH28 118 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE12BA1L429 117 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE7O76087 117 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE12FP0CL80 117 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE12GP0CL81 117 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE12IP0CL82 117 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 HNRNPA3P51991 378 aaKnown RBP3.82□□□□□ -1.8
COL17A1-206ENST00000483876 RPL39P62891 51 aaKnown RBP3.82□□□□□ -1.8
COL17A1-206ENST00000483876 CTAG1AP78358 180 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 ZC2HC1BQ5TFG8 222 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 NFE4Q86UQ8 179 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 OR11H2Q8NH07 326 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 C2orf88Q9BSF0 95 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 Q9UF83 564 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 PRO0255Q9UI72 69 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 NACAE9PAV3 2078 aa3.82□□□□□ -1.8
COL17A1-206ENST00000483876 PLECQ15149 4684 aaKnown RBP3.81□□□□□ -1.8
COL17A1-206ENST00000483876 C11orf86A6NJI1 115 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 E9PLD3 99 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 SPART-AS1P0CW21 52 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 LINC00694P0DN24 101 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 FGF6P10767 208 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 ANKRD39Q53RE8 183 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 FAM19A3Q7Z5A8 133 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 FAM104AQ969W3 186 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 SNHG12Q9BXW3 62 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 HIGD1BQ9P298 99 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 UBE2D4Q9Y2X8 147 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 ALMS1Q8TCU4 4167 aa3.81□□□□□ -1.8
COL17A1-206ENST00000483876 DMBT1Q9UGM3 2413 aaPredicted RBP3.8□□□□□ -1.8
COL17A1-206ENST00000483876 IGLV4-69A0A075B6H9 119 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 IGLV4-3A0A075B6K6 122 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 TRAV26-1A0A087WT03 109 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 DEFB130BP0DP73 79 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 DEFB130AP0DP74 79 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 ZNF25P17030 456 aaPredicted RBP3.8□□□□□ -1.8
COL17A1-206ENST00000483876 EMP1P54849 157 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 TIRAPP58753 221 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 HERVK_113P61574 105 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 SEC11AP67812 179 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 DEFB135Q30KP9 77 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 FAM222AQ5U5X8 452 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 DGAT2L7PQ6IED9 249 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 SH2D6Q7Z4S9 175 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 SBSPONQ8IVN8 264 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 Q8NAQ8 132 aa3.8□□□□□ -1.8
COL17A1-206ENST00000483876 HUWE1Q7Z6Z7 4374 aaKnown RBP3.79□□□□□ -1.8
COL17A1-206ENST00000483876 TRBV25-1A0A075B6N4 114 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 TRBV6-8A0A0A6YYG3 113 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 IGHV4-28A0A0C4DH34 117 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 TINCRA0A1B0GVN0 87 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE12JA6NER3 117 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 H3BNG1 76 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 ATP5G1P05496 136 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE1Q13065 139 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE4Q13068 117 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE5Q13069 117 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 TAL2Q16559 108 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 GAGE13Q4V321 117 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 COL5A1-AS1Q5SY13 56 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 NTM-AS1Q6ZSK4 140 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 PHLDA1Q8WV24 401 aaPredicted RBP3.79□□□□□ -1.8
COL17A1-206ENST00000483876 TMEM243Q9BU79 118 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 CDC42SE2Q9NRR3 84 aa3.79□□□□□ -1.8
COL17A1-206ENST00000483876 IGLV5-45A0A087WSX0 123 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 IGKV2D-26A0A0A0MRZ7 120 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 IGHV3-38A0A0C4DH36 116 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 MYMXA0A1B0GTQ4 84 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 A0A1B0GUV1 79 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 TMEM223A0PJW6 202 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 CCL25O15444 150 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 NMUP48645 174 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 DAD1P61803 113 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 C2orf91Q6ZV80 131 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 PCP2Q8IVA1 136 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 MAPKAPK5-AS1Q8N8E1 139 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 ATP6V0E2Q8NHE4 81 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 TMEM101Q96IK0 257 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 OPRPNQ99935 248 aaPredicted RBP3.78□□□□□ -1.8
COL17A1-206ENST00000483876 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 C11orf68Q9H3H3 251 aaKnown RBP3.78□□□□□ -1.8
COL17A1-206ENST00000483876 DNAH10Q8IVF4 4471 aa3.78□□□□□ -1.8
COL17A1-206ENST00000483876 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.77□□□□□ -1.81
COL17A1-206ENST00000483876 A0A0J9YXV3 536 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 IGKV2-29A2NJV5 120 aaPredicted RBP3.77□□□□□ -1.81
COL17A1-206ENST00000483876 UBE2L6O14933 153 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 LEPROTO15243 131 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 PAX4O43316 350 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 GYPEP15421 78 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 UBE2D1P51668 147 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 HERVK_113P63121 156 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 HSD52Q0P140 79 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 MRPL23Q16540 153 aaKnown RBP3.77□□□□□ -1.81
COL17A1-206ENST00000483876 MPV17L2Q567V2 206 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 BVES-AS1Q5T3Y7 98 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 TMEM170BQ5T4T1 132 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 AMMECR1LQ6DCA0 310 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 OR5A1Q8NGJ0 315 aa3.77□□□□□ -1.81
COL17A1-206ENST00000483876 DEFB104AQ8WTQ1 72 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms