RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 S100A9P06702 114 aaKnown RBP4.51□□□□□ -1.69
USP54-213ENST00000481991 TWIST1Q15672 202 aa4.51□□□□□ -1.69
USP54-213ENST00000481991 RPL39LQ96EH5 51 aaKnown RBP4.51□□□□□ -1.69
USP54-213ENST00000481991 IMMP2LQ96T52 175 aa4.51□□□□□ -1.69
USP54-213ENST00000481991 ANAPC11Q9NYG5 84 aa4.51□□□□□ -1.69
USP54-213ENST00000481991 ALG5Q9Y673 324 aa4.51□□□□□ -1.69
USP54-213ENST00000481991 TRAV13-1A0A0B4J241 112 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 ZNF861PO60384 105 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 NCR2O95944 276 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 ZNF25P17030 456 aaPredicted RBP4.5□□□□□ -1.69
USP54-213ENST00000481991 SPAG11BQ08648 103 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 LYZL1Q6UWQ5 148 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 GATD1Q8NB37 220 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 C2orf48Q96LS8 159 aa4.5□□□□□ -1.69
USP54-213ENST00000481991 A0A087X002 238 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 BORCS7-ASMTA0A0B4J1R7 106 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 SCO2A0A1W2PP80 73 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 MAP1LC3B2A6NCE7 125 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 C1orf196B1AJZ1 125 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 F2Z2F3 143 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 IFNA1P01562 189 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 RPS20P60866 119 aaKnown RBP4.49□□□□□ -1.69
USP54-213ENST00000481991 RNASE13Q5GAN3 156 aaKnown RBP4.49□□□□□ -1.69
USP54-213ENST00000481991 TMUB2Q71RG4 321 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 MAP1LC3BQ9GZQ8 125 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 MED28Q9H204 178 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 PPDPFQ9H3Y8 114 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 RPP21Q9H633 154 aaKnown RBP4.49□□□□□ -1.69
USP54-213ENST00000481991 CDC42SE2Q9NRR3 84 aa4.49□□□□□ -1.69
USP54-213ENST00000481991 XKRY2A2RUG3 117 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 SDHAF1A6NFY7 115 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 I3L3M4 83 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 PFDN1O60925 122 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 TSHBP01222 138 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 ESDP10768 282 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 FHITP49789 147 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 TPRXLQ17RH7 258 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 RNF151Q2KHN1 245 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 RPL7L1Q6DKI1 246 aaKnown RBP4.48□□□□□ -1.69
USP54-213ENST00000481991 SMIM15Q7Z3B0 74 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 MRAP2Q96G30 205 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 TCEAL7Q9BRU2 100 aa4.48□□□□□ -1.69
USP54-213ENST00000481991 NDUFA1O15239 70 aa4.47□□□□□ -1.69
USP54-213ENST00000481991 TMEM241Q24JQ0 296 aa4.47□□□□□ -1.69
USP54-213ENST00000481991 UNQ6190/PRO20217Q6UXQ8 127 aa4.47□□□□□ -1.69
USP54-213ENST00000481991 LINC00304Q8N9R0 145 aa4.47□□□□□ -1.69
USP54-213ENST00000481991 ORAOV1Q8WV07 137 aa4.47□□□□□ -1.69
USP54-213ENST00000481991 CTDSP1Q9GZU7 261 aa4.47□□□□□ -1.69
USP54-213ENST00000481991 KRTAP9-7A8MTY7 169 aa4.46□□□□□ -1.7
USP54-213ENST00000481991 IGLC6P0CF74 106 aa4.46□□□□□ -1.7
USP54-213ENST00000481991 C10orf25Q5T742 122 aa4.46□□□□□ -1.7
USP54-213ENST00000481991 SFT2D1Q8WV19 159 aa4.46□□□□□ -1.7
USP54-213ENST00000481991 TMEM242Q9NWH2 141 aa4.46□□□□□ -1.7
USP54-213ENST00000481991 MRPL35Q9NZE8 188 aaKnown RBP4.46□□□□□ -1.7
USP54-213ENST00000481991 G3V3Q6 166 aa4.45□□□□□ -1.7
USP54-213ENST00000481991 RPL35P42766 123 aaKnown RBP4.45□□□□□ -1.7
USP54-213ENST00000481991 RPL28P46779 137 aaKnown RBP4.45□□□□□ -1.7
USP54-213ENST00000481991 FOXA3P55318 350 aaPredicted RBP4.45□□□□□ -1.7
USP54-213ENST00000481991 LCE3BQ5TA77 95 aa4.45□□□□□ -1.7
USP54-213ENST00000481991 ST20Q9HBF5 79 aa4.45□□□□□ -1.7
USP54-213ENST00000481991 IGKV2D-26A0A0A0MRZ7 120 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 FCER1GP30273 86 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 LINC00242Q5T6M2 205 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 KRTAP7-1Q8IUC3 87 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 KCNRGQ8N5I3 272 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 OR10D4PQ8NGN7 298 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 C6orf48Q9UBA6 75 aa4.44□□□□□ -1.7
USP54-213ENST00000481991 FXYD6-FXYD2A0A087WZ82 144 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 C7orf77A4D0Y5 90 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 RAB19A4D1S5 217 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 NUPR1O60356 82 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 SEC61BP60468 96 aaKnown RBP4.43□□□□□ -1.7
USP54-213ENST00000481991 LBHQ53QV2 105 aaPredicted RBP4.43□□□□□ -1.7
USP54-213ENST00000481991 CENPWQ5EE01 88 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 TEX261Q6UWH6 196 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 C9orf62Q8N4C0 152 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 LINC00469Q8N7U9 141 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 FAM213BQ8TBF2 198 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 FAM210AQ96ND0 272 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 MARVELD1Q9BSK0 173 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 KRTAP4-1Q9BYQ7 146 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 SMDT1Q9H4I9 107 aa4.43□□□□□ -1.7
USP54-213ENST00000481991 SMAGPQ0VAQ4 97 aa4.42□□□□□ -1.7
USP54-213ENST00000481991 KRTAP13-2Q52LG2 175 aa4.42□□□□□ -1.7
USP54-213ENST00000481991 MRPL52Q86TS9 123 aaKnown RBP4.42□□□□□ -1.7
USP54-213ENST00000481991 PACRGQ96M98 296 aaPredicted RBP4.42□□□□□ -1.7
USP54-213ENST00000481991 RNASE7Q9H1E1 156 aaKnown RBP4.42□□□□□ -1.7
USP54-213ENST00000481991 CYTL1Q9NRR1 136 aa4.42□□□□□ -1.7
USP54-213ENST00000481991 C22orf24Q9Y442 160 aa4.42□□□□□ -1.7
USP54-213ENST00000481991 RPL37AP8A6NKH3 93 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 F8WDY8 70 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 TLX1NBP0CAT3 122 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 UBE2AP49459 152 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 GNG4P50150 75 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 ASB16-AS1Q495Z4 193 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 Q5BKY6 102 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 C9orf129Q5T035 196 aaKnown RBP4.41□□□□□ -1.7
USP54-213ENST00000481991 NUDT10Q8NFP7 164 aa4.41□□□□□ -1.7
USP54-213ENST00000481991 NUDT11Q96G61 164 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms