RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 NTF3P20783 257 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 CTRLP40313 264 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 CEBPGP53567 150 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 PKIAP61925 76 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 RASL11AQ6T310 242 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 ENHOQ6UWT2 76 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 OCC1Q8TAD7 63 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 DEFB104AQ8WTQ1 72 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 LITAFQ99732 161 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 GFRA4Q9GZZ7 299 aa3.99□□□□□ -1.77
VPS50-215ENST00000480943 RPP21Q9H633 154 aaKnown RBP3.99□□□□□ -1.77
VPS50-215ENST00000480943 FLG2Q5D862 2391 aaPredicted RBP3.98□□□□□ -1.77
VPS50-215ENST00000480943 DMBT1Q9UGM3 2413 aaPredicted RBP3.98□□□□□ -1.77
VPS50-215ENST00000480943 IGHV1-24A0A0C4DH33 117 aa3.98□□□□□ -1.77
VPS50-215ENST00000480943 RBX1P62877 108 aa3.98□□□□□ -1.77
VPS50-215ENST00000480943 IQCJQ1A5X6 159 aa3.98□□□□□ -1.77
VPS50-215ENST00000480943 STPG4Q8N801 248 aa3.98□□□□□ -1.77
VPS50-215ENST00000480943 HERC1Q15751 4861 aa3.98□□□□□ -1.77
VPS50-215ENST00000480943 MYCBP2O75592 4640 aa3.98□□□□□ -1.77
VPS50-215ENST00000480943 TRAV26-2A0A0B4J265 109 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 TMEM250H0YL14 139 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 GATCO43716 136 aaKnown RBP3.97□□□□□ -1.77
VPS50-215ENST00000480943 KRTAP5-8O75690 187 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 MIAQ16674 131 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 Q6ZSA8 131 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 LINC00269Q8N2A0 174 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 TMEM243Q9BU79 118 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 EIF5A2Q9GZV4 153 aaKnown RBP3.97□□□□□ -1.77
VPS50-215ENST00000480943 NIT2Q9NQR4 276 aa3.97□□□□□ -1.77
VPS50-215ENST00000480943 IGLV4-60A0A075B6I1 120 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 IGLV10-54A0A075B6I4 117 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 A0A1B0GVG6 124 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 SMIM1B2RUZ4 78 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 UBE2L6O14933 153 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 REG3AQ06141 175 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 COTL1Q14019 142 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 FAM231DQ6ZW35 169 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 SCXQ7RTU7 201 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 SMIM15Q7Z3B0 74 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 GATD1Q8NB37 220 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 C20orf203Q8NBC4 194 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 LYPD6BQ8NI32 183 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 GTSF1Q8WW33 167 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 RPL39LQ96EH5 51 aaKnown RBP3.96□□□□□ -1.78
VPS50-215ENST00000480943 PGLYRP4Q96LB8 373 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 SMIM7Q9BQ49 75 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 CNFNQ9BYD5 112 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 PRR34Q9NV39 138 aa3.96□□□□□ -1.78
VPS50-215ENST00000480943 ZNF727A8MUV8 499 aa3.95□□□□□ -1.78
VPS50-215ENST00000480943 A8MWL6 223 aa3.95□□□□□ -1.78
VPS50-215ENST00000480943 SRP19P09132 144 aaKnown RBP3.95□□□□□ -1.78
VPS50-215ENST00000480943 FOXA3P55318 350 aaPredicted RBP3.95□□□□□ -1.78
VPS50-215ENST00000480943 BORCS7Q96B45 105 aa3.95□□□□□ -1.78
VPS50-215ENST00000480943 FAM210AQ96ND0 272 aa3.95□□□□□ -1.78
VPS50-215ENST00000480943 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.94□□□□□ -1.78
VPS50-215ENST00000480943 IGKV3OR2-268A0A0C4DH90 116 aa3.94□□□□□ -1.78
VPS50-215ENST00000480943 IGKV2-29A2NJV5 120 aaPredicted RBP3.94□□□□□ -1.78
VPS50-215ENST00000480943 APCSP02743 223 aa3.94□□□□□ -1.78
VPS50-215ENST00000480943 KRTAP26-1Q6PEX3 210 aa3.94□□□□□ -1.78
VPS50-215ENST00000480943 LINC01551Q86U37 167 aa3.94□□□□□ -1.78
VPS50-215ENST00000480943 KRTAP7-1Q8IUC3 87 aa3.94□□□□□ -1.78
VPS50-215ENST00000480943 CIRBP-AS1Q8TBR5 109 aa3.94□□□□□ -1.78
VPS50-215ENST00000480943 TRAV8-4A0A0B4J246 113 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 SDHAF1A6NFY7 115 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 HIGD1CA8MV81 97 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 NCR2O95944 276 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 KRTAP13-3Q3SY46 172 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 AMMECR1LQ6DCA0 310 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 RNASEKQ6P5S7 137 aaKnown RBP3.93□□□□□ -1.78
VPS50-215ENST00000480943 TEX261Q6UWH6 196 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 TSKUQ8WUA8 353 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 CHAC1Q9BUX1 264 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 OSTCQ9NRP0 149 aa3.93□□□□□ -1.78
VPS50-215ENST00000480943 A0A1B0GUT8 65 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 NDUFS6O75380 124 aaKnown RBP3.92□□□□□ -1.78
VPS50-215ENST00000480943 PMCHP20382 165 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 ADIRFQ15847 76 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 C9orf163Q8N9P6 203 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 ISOC2Q96AB3 205 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 TMEM191AQ9H0A3 160 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 ST20Q9HBF5 79 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 TMEM242Q9NWH2 141 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 V9GYV3 84 aa3.92□□□□□ -1.78
VPS50-215ENST00000480943 PKHD1L1Q86WI1 4243 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 SMKR1H3BMG3 65 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 I3L3M4 83 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 SCGB1D1O95968 90 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 FGF6P10767 208 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 RAB4AP20338 218 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 RPS10P46783 165 aaKnown RBP3.91□□□□□ -1.78
VPS50-215ENST00000480943 RPL23P62829 140 aaKnown RBP3.91□□□□□ -1.78
VPS50-215ENST00000480943 RIGQ13278 110 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 TMEM241Q24JQ0 296 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 HIGD2BQ4VC39 106 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 ZC2HC1BQ5TFG8 222 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 Q75L30 129 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 AMN1Q8IY45 258 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 C15orf56Q8N910 161 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 NUP35Q8NFH5 326 aa3.91□□□□□ -1.78
VPS50-215ENST00000480943 CHCHD10Q8WYQ3 142 aaPredicted RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms