RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 BIRC6Q9NR09 4857 aa9.7□□□□□ -0.86
LIMS3-202ENST00000479168 CCL25O15444 150 aa9.7□□□□□ -0.86
LIMS3-202ENST00000479168 Q8N8P6 123 aa9.7□□□□□ -0.86
LIMS3-202ENST00000479168 UBE2D4Q9Y2X8 147 aa9.7□□□□□ -0.86
LIMS3-202ENST00000479168 IGLV5-52A0A0A0MRZ9 124 aa9.69□□□□□ -0.86
LIMS3-202ENST00000479168 PKHD1P08F94 4074 aa9.69□□□□□ -0.86
LIMS3-202ENST00000479168 KRTAP10-2P60368 255 aa9.69□□□□□ -0.86
LIMS3-202ENST00000479168 ZNF664Q8N3J9 261 aa9.69□□□□□ -0.86
LIMS3-202ENST00000479168 BAALCQ8WXS3 180 aa9.69□□□□□ -0.86
LIMS3-202ENST00000479168 CDC42SE2Q9NRR3 84 aa9.69□□□□□ -0.86
LIMS3-202ENST00000479168 IGLV10-54A0A075B6I4 117 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 IGKV3OR2-268A0A0C4DH90 116 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 LOC389332A0A1B0GUA5 103 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 LINC01549A6NIU2 74 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 IFI27P40305 119 aaPredicted RBP9.68□□□□□ -0.86
LIMS3-202ENST00000479168 SS18Q15532 418 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 CFAP161Q6P656 301 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 MRPL18Q9H0U6 180 aaKnown RBP9.68□□□□□ -0.86
LIMS3-202ENST00000479168 SMCO4Q9NRQ5 59 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 CYSLTR1Q9Y271 337 aa9.68□□□□□ -0.86
LIMS3-202ENST00000479168 MRPS36P82909 103 aaKnown RBP9.67□□□□□ -0.86
LIMS3-202ENST00000479168 FABP9Q0Z7S8 132 aa9.67□□□□□ -0.86
LIMS3-202ENST00000479168 MAPKAPK5-AS1Q8N8E1 139 aa9.67□□□□□ -0.86
LIMS3-202ENST00000479168 TGIF2-C20orf24A0A0A6YYL0 155 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 USP17L23D6RBM5 183 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 LECT2O14960 151 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 NPSP0C0P6 89 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 KIAA1644Q3SXP7 199 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 SLC7A5P1Q8MH63 180 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 PRSS3P2Q8NHM4 247 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 CHCHD10Q8WYQ3 142 aaPredicted RBP9.66□□□□□ -0.86
LIMS3-202ENST00000479168 PYGO1Q9Y3Y4 419 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 TRAPPC1Q9Y5R8 145 aa9.66□□□□□ -0.86
LIMS3-202ENST00000479168 LINC00959A0A1B0GUT2 108 aa9.65□□□□□ -0.86
LIMS3-202ENST00000479168 C1orf196B1AJZ1 125 aa9.65□□□□□ -0.86
LIMS3-202ENST00000479168 GCSHP23434 173 aa9.65□□□□□ -0.86
LIMS3-202ENST00000479168 PAPPA-AS1Q5QFB9 102 aa9.65□□□□□ -0.86
LIMS3-202ENST00000479168 KRTAP26-1Q6PEX3 210 aa9.65□□□□□ -0.86
LIMS3-202ENST00000479168 Q6ZN92 141 aa9.65□□□□□ -0.86
LIMS3-202ENST00000479168 ALKBH7Q9BT30 221 aaPredicted RBP9.65□□□□□ -0.86
LIMS3-202ENST00000479168 GAGE12HA6NDE8 117 aa9.64□□□□□ -0.87
LIMS3-202ENST00000479168 CDK2AP2O75956 126 aa9.64□□□□□ -0.87
LIMS3-202ENST00000479168 RPL39P62891 51 aaKnown RBP9.64□□□□□ -0.87
LIMS3-202ENST00000479168 WFDC2Q14508 124 aa9.64□□□□□ -0.87
LIMS3-202ENST00000479168 Q6ZUT4 128 aa9.64□□□□□ -0.87
LIMS3-202ENST00000479168 DNAH11Q96DT5 4516 aa9.64□□□□□ -0.87
LIMS3-202ENST00000479168 XCL1P47992 114 aa9.63□□□□□ -0.87
LIMS3-202ENST00000479168 CD164L2Q6UWJ8 174 aa9.63□□□□□ -0.87
LIMS3-202ENST00000479168 C2orf66Q6UXQ4 117 aa9.63□□□□□ -0.87
LIMS3-202ENST00000479168 FA2HQ7L5A8 372 aa9.63□□□□□ -0.87
LIMS3-202ENST00000479168 AP5S1Q9NUS5 200 aa9.63□□□□□ -0.87
LIMS3-202ENST00000479168 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.62□□□□□ -0.87
LIMS3-202ENST00000479168 TMEM141Q96I45 108 aa9.62□□□□□ -0.87
LIMS3-202ENST00000479168 C2orf88Q9BSF0 95 aa9.62□□□□□ -0.87
LIMS3-202ENST00000479168 PKD1P98161 4303 aa9.61□□□□□ -0.87
LIMS3-202ENST00000479168 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.61□□□□□ -0.87
LIMS3-202ENST00000479168 TRAV13-1A0A0B4J241 112 aa9.61□□□□□ -0.87
LIMS3-202ENST00000479168 IFITM10A6NMD0 228 aa9.61□□□□□ -0.87
LIMS3-202ENST00000479168 TMA7Q9Y2S6 64 aaKnown RBP9.61□□□□□ -0.87
LIMS3-202ENST00000479168 hDV102S1A0JD36 115 aa9.6□□□□□ -0.87
LIMS3-202ENST00000479168 RAB5BP61020 215 aa9.6□□□□□ -0.87
LIMS3-202ENST00000479168 FOXI1Q12951 378 aa9.6□□□□□ -0.87
LIMS3-202ENST00000479168 TEX43Q6ZNM6 134 aa9.6□□□□□ -0.87
LIMS3-202ENST00000479168 CBLN2Q8IUK8 224 aa9.6□□□□□ -0.87
LIMS3-202ENST00000479168 YPEL4Q96NS1 127 aa9.6□□□□□ -0.87
LIMS3-202ENST00000479168 IGHV1-58A0A0C4DH39 117 aa9.59□□□□□ -0.87
LIMS3-202ENST00000479168 LINC01546A6NGU7 62 aa9.59□□□□□ -0.87
LIMS3-202ENST00000479168 COX7A2LO14548 114 aa9.59□□□□□ -0.87
LIMS3-202ENST00000479168 MALP21145 153 aa9.59□□□□□ -0.87
LIMS3-202ENST00000479168 TOMM6Q96B49 74 aa9.59□□□□□ -0.87
LIMS3-202ENST00000479168 TIMM17AQ99595 171 aa9.59□□□□□ -0.87
LIMS3-202ENST00000479168 IGLV4-3A0A075B6K6 122 aa9.58□□□□□ -0.88
LIMS3-202ENST00000479168 APOMO95445 188 aa9.58□□□□□ -0.88
LIMS3-202ENST00000479168 CNBPP62633 177 aaKnown RBP9.58□□□□□ -0.88
LIMS3-202ENST00000479168 RNASE13Q5GAN3 156 aaKnown RBP9.58□□□□□ -0.88
LIMS3-202ENST00000479168 PKIGQ9Y2B9 76 aa9.58□□□□□ -0.88
LIMS3-202ENST00000479168 DYNC1H1Q14204 4646 aaKnown RBP9.58□□□□□ -0.88
LIMS3-202ENST00000479168 GVQW2A0A096LPI5 108 aaPredicted RBP9.57□□□□□ -0.88
LIMS3-202ENST00000479168 PRSS1P07477 247 aa9.57□□□□□ -0.88
LIMS3-202ENST00000479168 ERASQ7Z444 233 aa9.57□□□□□ -0.88
LIMS3-202ENST00000479168 VCX2Q9H322 139 aa9.57□□□□□ -0.88
LIMS3-202ENST00000479168 IGIPA6NJ69 53 aa9.56□□□□□ -0.88
LIMS3-202ENST00000479168 FUSP35637 526 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIMS3-202ENST00000479168 SEC11AP67812 179 aa9.56□□□□□ -0.88
LIMS3-202ENST00000479168 C18orf32Q8TCD1 76 aa9.56□□□□□ -0.88
LIMS3-202ENST00000479168 KRTAP10-1P60331 282 aa9.55□□□□□ -0.88
LIMS3-202ENST00000479168 C15orf56Q8N910 161 aa9.55□□□□□ -0.88
LIMS3-202ENST00000479168 SCGB3A1Q96QR1 104 aa9.55□□□□□ -0.88
LIMS3-202ENST00000479168 ZNF561-AS1K7EIQ3 104 aa9.54□□□□□ -0.88
LIMS3-202ENST00000479168 LINC00614P0C842 121 aa9.54□□□□□ -0.88
LIMS3-202ENST00000479168 C9orf163Q8N9P6 203 aa9.53□□□□□ -0.88
LIMS3-202ENST00000479168 FAM104AQ969W3 186 aa9.53□□□□□ -0.88
LIMS3-202ENST00000479168 AMELXQ99217 191 aa9.53□□□□□ -0.88
LIMS3-202ENST00000479168 OPRPNQ99935 248 aaPredicted RBP9.53□□□□□ -0.88
LIMS3-202ENST00000479168 LRP1BQ9NZR2 4599 aa9.53□□□□□ -0.88
LIMS3-202ENST00000479168 IGHV3-64A0A075B6Q5 118 aa9.52□□□□□ -0.89
LIMS3-202ENST00000479168 HBDP02042 147 aa9.52□□□□□ -0.89
LIMS3-202ENST00000479168 UBE2D1P51668 147 aa9.52□□□□□ -0.89
LIMS3-202ENST00000479168 HIGD2BQ4VC39 106 aa9.52□□□□□ -0.89
LIMS3-202ENST00000479168 OR10D4PQ8NGN7 298 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms