RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ISOC2Q96AB3 205 aa10.56□□□□□ -0.72
USP40-212ENST00000473191 BORCS7Q96B45 105 aa10.56□□□□□ -0.72
USP40-212ENST00000473191 ST20Q9HBF5 79 aa10.56□□□□□ -0.72
USP40-212ENST00000473191 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.55□□□□□ -0.72
USP40-212ENST00000473191 OXTP01178 125 aa10.55□□□□□ -0.72
USP40-212ENST00000473191 XCL1P47992 114 aa10.55□□□□□ -0.72
USP40-212ENST00000473191 RPL23P62829 140 aaKnown RBP10.55□□□□□ -0.72
USP40-212ENST00000473191 OR5A1Q8NGJ0 315 aa10.55□□□□□ -0.72
USP40-212ENST00000473191 LINC00959A0A1B0GUT2 108 aa10.54□□□□□ -0.72
USP40-212ENST00000473191 CCL25O15444 150 aa10.54□□□□□ -0.72
USP40-212ENST00000473191 NDUFS6O75380 124 aaKnown RBP10.54□□□□□ -0.72
USP40-212ENST00000473191 UQCC3Q6UW78 93 aa10.54□□□□□ -0.72
USP40-212ENST00000473191 SLC7A5P1Q8MH63 180 aa10.54□□□□□ -0.72
USP40-212ENST00000473191 DPH3Q96FX2 82 aa10.54□□□□□ -0.72
USP40-212ENST00000473191 GVQW2A0A096LPI5 108 aaPredicted RBP10.53□□□□□ -0.72
USP40-212ENST00000473191 ZNF25P17030 456 aaPredicted RBP10.53□□□□□ -0.72
USP40-212ENST00000473191 NRACQ8N912 160 aa10.53□□□□□ -0.72
USP40-212ENST00000473191 IGKV2-24A0A0C4DH68 120 aa10.52□□□□□ -0.73
USP40-212ENST00000473191 TRBV27A0A0K0K1C4 114 aa10.52□□□□□ -0.73
USP40-212ENST00000473191 CFAP161Q6P656 301 aa10.52□□□□□ -0.73
USP40-212ENST00000473191 MRAP2Q96G30 205 aa10.52□□□□□ -0.73
USP40-212ENST00000473191 SMDT1Q9H4I9 107 aa10.52□□□□□ -0.73
USP40-212ENST00000473191 CDC42SE2Q9NRR3 84 aa10.52□□□□□ -0.73
USP40-212ENST00000473191 PHOX2AO14813 284 aa10.51□□□□□ -0.73
USP40-212ENST00000473191 ADIRFQ15847 76 aa10.51□□□□□ -0.73
USP40-212ENST00000473191 TMEM241Q24JQ0 296 aa10.51□□□□□ -0.73
USP40-212ENST00000473191 RNASE13Q5GAN3 156 aaKnown RBP10.51□□□□□ -0.73
USP40-212ENST00000473191 BTF3L4Q96K17 158 aa10.51□□□□□ -0.73
USP40-212ENST00000473191 PLAC8Q9NZF1 115 aa10.51□□□□□ -0.73
USP40-212ENST00000473191 A0A096LNI7 61 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 C7orf77A4D0Y5 90 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 MT1HL1P0DM35 61 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 RIGQ13278 110 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 MAJINQ3KP22 176 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 MRPL51Q4U2R6 128 aaKnown RBP10.5□□□□□ -0.73
USP40-212ENST00000473191 MRPL52Q86TS9 123 aaKnown RBP10.5□□□□□ -0.73
USP40-212ENST00000473191 ZNF664Q8N3J9 261 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 TMEM101Q96IK0 257 aa10.5□□□□□ -0.73
USP40-212ENST00000473191 SMIM27A0A1W2PRY6 76 aa10.48□□□□□ -0.73
USP40-212ENST00000473191 SUMO2P61956 95 aaKnown RBP10.48□□□□□ -0.73
USP40-212ENST00000473191 NAT8BQ9UHF3 227 aa10.48□□□□□ -0.73
USP40-212ENST00000473191 UBE2D4Q9Y2X8 147 aa10.48□□□□□ -0.73
USP40-212ENST00000473191 VCYO14598 125 aa10.47□□□□□ -0.73
USP40-212ENST00000473191 CAMPP49913 170 aa10.47□□□□□ -0.73
USP40-212ENST00000473191 FAM74A3Q4VXF1 159 aa10.47□□□□□ -0.73
USP40-212ENST00000473191 FAM104BQ5XKR9 115 aa10.47□□□□□ -0.73
USP40-212ENST00000473191 STPG4Q8N801 248 aa10.47□□□□□ -0.73
USP40-212ENST00000473191 NAT8Q9UHE5 227 aa10.47□□□□□ -0.73
USP40-212ENST00000473191 ATP6V1G1O75348 118 aa10.46□□□□□ -0.73
USP40-212ENST00000473191 SS18Q15532 418 aa10.46□□□□□ -0.73
USP40-212ENST00000473191 CD164L2Q6UWJ8 174 aa10.46□□□□□ -0.73
USP40-212ENST00000473191 TNXBP22105 4242 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 IGHV1-58A0A0C4DH39 117 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 F8W036 122 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 FCER1GP30273 86 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 SERTAD4-AS1Q5TG53 156 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 Q6ZUT4 128 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 FAM104AQ969W3 186 aa10.45□□□□□ -0.74
USP40-212ENST00000473191 TMEM218A2RU14 115 aa10.44□□□□□ -0.74
USP40-212ENST00000473191 MRPL54Q6P161 138 aaKnown RBP10.44□□□□□ -0.74
USP40-212ENST00000473191 CARD19Q96LW7 228 aa10.44□□□□□ -0.74
USP40-212ENST00000473191 UBR4Q5T4S7 5183 aa10.44□□□□□ -0.74
USP40-212ENST00000473191 RPL39P62891 51 aaKnown RBP10.43□□□□□ -0.74
USP40-212ENST00000473191 Q6ZRU5 148 aa10.43□□□□□ -0.74
USP40-212ENST00000473191 IGLV4-69A0A075B6H9 119 aa10.42□□□□□ -0.74
USP40-212ENST00000473191 TRAV13-1A0A0B4J241 112 aa10.42□□□□□ -0.74
USP40-212ENST00000473191 OPRPNQ99935 248 aaPredicted RBP10.42□□□□□ -0.74
USP40-212ENST00000473191 SEC11CQ9BY50 192 aa10.42□□□□□ -0.74
USP40-212ENST00000473191 CSDC2Q9Y534 153 aaKnown RBP10.42□□□□□ -0.74
USP40-212ENST00000473191 TNFRSF6BO95407 300 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 NPYP01303 97 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 S100A1P23297 94 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 PRR3P79522 188 aaKnown RBP10.41□□□□□ -0.74
USP40-212ENST00000473191 SYCNQ0VAF6 134 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 ODF1Q14990 250 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 C5orf38Q86SI9 138 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 KIR2DL4Q99706 377 aa10.41□□□□□ -0.74
USP40-212ENST00000473191 TRBV24-1A0A075B6N3 115 aa10.4□□□□□ -0.74
USP40-212ENST00000473191 A0A1B0GXF2 115 aa10.4□□□□□ -0.74
USP40-212ENST00000473191 D6R8Y8 96 aa10.4□□□□□ -0.74
USP40-212ENST00000473191 ZNF561-AS1K7EIQ3 104 aa10.4□□□□□ -0.74
USP40-212ENST00000473191 CKS2P33552 79 aa10.4□□□□□ -0.74
USP40-212ENST00000473191 C7orf33Q8WU49 177 aa10.4□□□□□ -0.74
USP40-212ENST00000473191 C1orf196B1AJZ1 125 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 PPP1R2P9O14990 202 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 TCAPO15273 167 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 PPP1R17O96001 155 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 ADCYAP1P18509 176 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 C20orf78Q9BR46 151 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 PLA2G2DQ9UNK4 145 aa10.39□□□□□ -0.75
USP40-212ENST00000473191 COX7A2LO14548 114 aa10.38□□□□□ -0.75
USP40-212ENST00000473191 APOC3P02656 99 aa10.38□□□□□ -0.75
USP40-212ENST00000473191 MALP21145 153 aa10.38□□□□□ -0.75
USP40-212ENST00000473191 CARHSP1Q9Y2V2 147 aaKnown RBP10.38□□□□□ -0.75
USP40-212ENST00000473191 A0A0J9YXV3 536 aa10.37□□□□□ -0.75
USP40-212ENST00000473191 A0A1W2PNN7 141 aa10.37□□□□□ -0.75
USP40-212ENST00000473191 PTTG1IPP53801 180 aa10.37□□□□□ -0.75
USP40-212ENST00000473191 HBBP68871 147 aa10.37□□□□□ -0.75
USP40-212ENST00000473191 GAGE2BQ13066 116 aa10.37□□□□□ -0.75
USP40-212ENST00000473191 C10orf91Q5T1B1 145 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms