RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	DNAH14	Q0VDD8	3507 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	WDFY3	Q8IZQ1	3526 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	FREM2	Q5SZK8	3169 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PKD1	P98161	4303 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	GOLGB1	Q14789	3259 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	F5	P12259	2224 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CACNA1C	Q13936	2221 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ASXL3	Q9C0F0	2248 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ABCC5	O15440	1437 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CEP162	Q5TB80	1403 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	C10orf71	Q711Q0	1435 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CSMD1	Q96PZ7	3565 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PTPN23	Q9H3S7	1636 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CEP152	O94986	1710 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	TRBV10-3	A0A0K0K1G6	114 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SPAAR	A0A1B0GVQ0	90 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	C20orf202	A1L168	122 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	TMEM218	A2RU14	115 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	LINC01549	A6NIU2	74 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044		F6UZH7	168 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	APOC4-APOC2	K7ER74	178 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CORT	O00230	105 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SIX6	O95475	246 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PPP1R17	O96001	155 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	APOC2	P02655	101 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	RBP4	P02753	201 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ACYP1	P07311	99 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	NMB	P08949	121 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PIRT	P0C851	137 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SMIM6	P0DI80	62 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PIP	P12273	146 aa	Predicted RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	GNG4	P50150	75 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SMIM11A	P58511	58 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	TPPP2	P59282	170 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ELOF1	P60002	83 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	KRTDAP	P60985	99 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	COPZ1	P61923	177 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	RRAS2	P62070	204 aa	Predicted RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	NCS1	P62166	190 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CCL8	P80075	99 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	DCD	P81605	110 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SSBP1	Q04837	148 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SMIM21	Q3B7S5	101 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044		Q5BKY6	102 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	RPL13AP3	Q6NVV1	102 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	MRPL54	Q6P161	138 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SLC48A1	Q6P1K1	146 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	COX6B2	Q6YFQ2	88 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ZNF818P	Q6ZRF7	136 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CTAGE3P	Q8IX95	158 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ATP6V0E2	Q8NHE4	81 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PP6455	Q8WZ26	134 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ARL11	Q969Q4	196 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	TMEM141	Q96I45	108 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PSMG3	Q9BT73	122 aa	Predicted RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	LINC00470	Q9BZP3	86 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	NAA60	Q9H7X0	242 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PROK2	Q9HC23	129 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	LINC00846	Q9NV44	126 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	TMEM242	Q9NWH2	141 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	COA4	Q9NYJ1	87 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	COPZ2	Q9P299	210 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	NOP16	Q9Y3C1	178 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	AP4S1	Q9Y587	144 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CSMD2	Q7Z408	3487 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SPTAN1	Q13813	2472 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	DOPEY1	Q5JWR5	2465 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PLIN4	Q96Q06	1357 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	DYNC2H1	Q8NCM8	4307 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	A2ML1	A8K2U0	1454 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ADGRL2	O95490	1459 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	GRIN2A	Q12879	1464 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	CCDC141	Q6ZP82	1450 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	IFT140	Q96RY7	1462 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SHANK2	Q9UPX8	1470 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PI4KA	P42356	2102 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ADGRB1	O14514	1584 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	THOC2	Q8NI27	1593 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PEG3	Q9GZU2	1588 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	DIP2C	Q9Y2E4	1556 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	QRICH2	Q9H0J4	1663 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ADGRG4	Q8IZF6	3080 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ACAN	P16112	2415 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	SON	P18583	2426 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	ABCA2	Q9BZC7	2435 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	EP400	Q96L91	3159 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	MTOR	P42345	2549 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	MGAM2	Q2M2H8	2515 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	TLN2	Q9Y4G6	2542 aa		0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	DOPEY2	Q9Y3R5	2298 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	WNK2	Q9Y3S1	2297 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	NBAS	A2RRP1	2371 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	CLIP1	P30622	1438 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	ANKAR	Q7Z5J8	1434 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	ANKRD50	Q9ULJ7	1429 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	UTRN	P46939	3433 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	SZT2	Q5T011	3432 aa		0.13	□□□□□ -2.39
PTCD3-209	ENST00000472044	ABCC3	O15438	1527 aa		0.13	□□□□□ -2.39

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms