RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 MAP6D1Q9H9H5 199 aa10.08□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 C1orf147Q96MC9 270 aaPredicted RBP10.08□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 LINC01545Q5VT33 79 aa10.08□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 USP9XQ93008 2570 aaPredicted RBP10.07□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 E7EUB6 86 aa10.07□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 INSL3P51460 131 aa10.07□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 IGLV2-8P01709 118 aa10.07□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 FXYD2P54710 66 aa10.07□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 TRBV6-1A0A0K0K1D8 114 aa10.06□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 G3V4G9 280 aa10.06□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 LINC00526Q96FQ7 95 aa10.06□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 IGHV1-58A0A0C4DH39 117 aa10.06□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 C11orf86A6NJI1 115 aa10.06□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 PIK3CD-AS1Q5SR53 167 aa10.06□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 LY6LH3BQJ8 138 aa10.05□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 CR1P17927 2039 aa10.04□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 WFDC13Q8IUB5 93 aa10.04□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 CHCHD10Q8WYQ3 142 aaPredicted RBP10.04□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 PLA2G2EQ9NZK7 142 aa10.04□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 UFSP1Q6NVU6 142 aa10.04□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 POLQO75417 2590 aa10.04□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 Q8N7P7 452 aa10.03□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 NDUFA11Q86Y39 141 aa10.03□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 TRBV10-1A0A0K0K1A3 114 aa10.03□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 LINC01548A6NM66 108 aa10.03□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 TOMM6Q96B49 74 aa10.03□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 TRBV7-6A0A0J9YX20 115 aa10.02□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 PTH2Q96A98 100 aa10.02□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 SDIM1Q6ZPB5 146 aa10.02□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 ZFAND2AQ8N6M9 145 aa10.02□□□□□ -0.8
NPHP3-ACAD11-201ENST00000471702 IGLV2-11P01706 119 aa10.02□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 C10orf91Q5T1B1 145 aa10.02□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 LINC00322Q6ZN03 302 aaPredicted RBP10.02□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 RPL37AP8A6NKH3 93 aa10.02□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 C20orf197Q8N268 126 aa10.02□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 C10orf25Q5T742 122 aa10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 FAM30AQ9NZY2 134 aa10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 PATE2Q6UY27 113 aa10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 ZNF843Q8N446 348 aa10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 COL5A1P20908 1838 aaPredicted RBP10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 A0A0J9YX75 114 aa10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 PLAC8L1A1L4L8 177 aa10.01□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 K7EMT4 169 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 LINC00467Q9BRT7 94 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 MTORP42345 2549 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 GOLGB1Q14789 3259 aaKnown RBP10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 PRLHP81277 87 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 H3BT86 120 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 LOXL1Q08397 574 aaPredicted RBP10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 ESRGQ1W209 222 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 Q8N976 141 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 MDFIQ99750 246 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 WISP2O76076 250 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 ACYP2P14621 99 aa10□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 DAZAP2Q15038 168 aaPredicted RBP9.99□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 NUPR1O60356 82 aa9.99□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 USP24Q9UPU5 2620 aa9.99□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 C19orf84I3L1E1 186 aa9.98□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 CCKP06307 115 aa9.98□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 TMEM223A0PJW6 202 aa9.98□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 E9PLD3 99 aa9.98□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 RNF185Q96GF1 192 aa9.98□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 ENHOQ6UWT2 76 aa9.98□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 BPTFQ12830 3046 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 IGLV5-52A0A0A0MRZ9 124 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 LY6G6DO95868 133 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 PMAIP1Q13794 54 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 LINC00474Q9P2X8 69 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 SNURFQ9Y675 71 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 WFDC10AQ9H1F0 79 aa9.97□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 MT-ATP8P03928 68 aa9.96□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 IGLV2-14P01704 120 aa9.96□□□□□ -0.81
NPHP3-ACAD11-201ENST00000471702 POM121L12Q8N7R1 296 aa9.96□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 FAM167A-AS1Q96KT0 104 aa9.95□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 PROK1P58294 105 aa9.95□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 NDUFV3P56181 108 aaKnown RBP9.95□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 C10orf99Q6UWK7 81 aa9.95□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 SPINT4Q6UDR6 99 aa9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 TIMM17BO60830 172 aa9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 SHISA2Q6UWI4 295 aa9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 PRM2P04554 102 aa9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 BBC3Q96PG8 261 aaPredicted RBP9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 KPRPQ5T749 579 aaPredicted RBP9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 IGFL2Q6UWQ7 119 aa9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 MIAQ16674 131 aa9.94□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 TRAV10A0A0B4J240 114 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 LYRM9A8MSI8 78 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 C20orf203Q8NBC4 194 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 NANOS2P60321 138 aaKnown RBP9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 DEFB114Q30KQ6 69 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 OXLD1Q5BKU9 147 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 CDKN2A-AS1Q9UH64 79 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 LOC100131303A0A0U1RQF7 123 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 FASNP49327 2511 aaKnown RBP9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 TRBV27A0A0K0K1C4 114 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 IGLV3-1P01715 115 aa9.93□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 SYCNQ0VAF6 134 aa9.92□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 GDF5OSQ5U4N7 250 aa9.92□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 CLUHP3Q96NS8 147 aa9.92□□□□□ -0.82
NPHP3-ACAD11-201ENST00000471702 FRMD6-AS1P0C7T7 363 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms