RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 C12orf45Q8N5I9 185 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-207ENST00000468384 PACRGLQ8N7B6 248 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 CYB561D1Q8N8Q1 229 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 RAB2BQ8WUD1 216 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 MBD3L1Q8WWY6 194 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 CCDC32Q9BV29 185 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 BET1LQ9NYM9 111 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 A0A087WX48 190 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 TRAV4A0A0B4J268 109 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 A8MWL6 223 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 HLA-DQB1P01920 261 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 CRPP02741 224 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 RPL7P18124 248 aaKnown RBP2.42□□□□□ -2.02
HMGB1-207ENST00000468384 HIST1H1AQ02539 215 aaPredicted RBP2.42□□□□□ -2.02
HMGB1-207ENST00000468384 CAV1Q03135 178 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 C2orf83Q53S99 150 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 RPL13AP3Q6NVV1 102 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 OR13C8Q8NGS7 320 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 LSM10Q969L4 123 aaKnown RBP2.42□□□□□ -2.02
HMGB1-207ENST00000468384 PLEKHB2Q96CS7 222 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 WDR61Q9GZS3 305 aaKnown RBP2.42□□□□□ -2.02
HMGB1-207ENST00000468384 CMC2Q9NRP2 79 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 SPANXA1Q9NS26 97 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 ANAPC11Q9NYG5 84 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 TP73-AS1Q9UF72 201 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 TMEM14AQ9Y6G1 99 aa2.42□□□□□ -2.02
HMGB1-207ENST00000468384 LINC00862A6NCI5 91 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 IGKV1-17P01599 117 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 COX4I1P13073 169 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 G6PCP35575 357 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 NDUFA5Q16718 116 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 KRTAP8-1Q8IUC2 63 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 OR10G2Q8NGC3 310 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 DNAJC9Q8WXX5 260 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 VPS25Q9BRG1 176 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 SLC50A1Q9BRV3 221 aa2.41□□□□□ -2.02
HMGB1-207ENST00000468384 TRBV20OR9-2A0A075B6H5 130 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 TRAV12-3A0A0B4J271 114 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 J3KT08 172 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 HRASP01112 189 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 OPRK1P41145 380 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 SERPINB10P48595 397 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 RPL30P62888 115 aaKnown RBP2.4□□□□□ -2.03
HMGB1-207ENST00000468384 Q5W150 140 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 OR10P1Q8NGE3 313 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 OR8A1Q8NGG7 326 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 NDFIP1Q9BT67 221 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 CHCHD7Q9BUK0 85 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 NDUFA4L2Q9NRX3 87 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 COPZ2Q9P299 210 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 AK3Q9UIJ7 227 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 BAIAP2Q9UQB8 552 aa2.4□□□□□ -2.03
HMGB1-207ENST00000468384 IGLV4-69A0A075B6H9 119 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 TRBV19A0A075B6N1 114 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 PLA2G10O15496 165 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 PTHLHP12272 177 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 PIGPP57054 158 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 MIAQ16674 131 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 TMEM244Q5VVB8 128 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 EIF5AL1Q6IS14 154 aaKnown RBP2.39□□□□□ -2.03
HMGB1-207ENST00000468384 ZFP1Q6P2D0 407 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 ZFP2Q6ZN57 461 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 ADM2Q7Z4H4 148 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 OR51A4Q8NGJ6 313 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 S100A13Q99584 98 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 HSPB8Q9UJY1 196 aa2.39□□□□□ -2.03
HMGB1-207ENST00000468384 TRAV9-1A0A075B6T8 112 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 A0A087WWC5 75 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 CCDC160A6NGH7 325 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 GADD45GO95257 159 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 IL4P05112 153 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 HRCT1Q6UXD1 115 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 AMN1Q8IY45 258 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 RNF182Q8N6D2 247 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 OR5D14Q8NGL3 314 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 MRPL36Q9P0J6 103 aaKnown RBP2.38□□□□□ -2.03
HMGB1-207ENST00000468384 NDUFA12Q9UI09 145 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 PHLDA3Q9Y5J5 127 aa2.38□□□□□ -2.03
HMGB1-207ENST00000468384 A0A1B0GX51 115 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 F8W036 122 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 K7ERS5 55 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 LINC00869P0C866 280 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 UBBP0CG47 229 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 SCGB2B2Q4G0G5 96 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 C9orf116Q5BN46 136 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-207ENST00000468384 LCE3CQ5T5A8 94 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 SPAG11AQ6PDA7 123 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 H1FOOQ8IZA3 346 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-207ENST00000468384 OR10D4PQ8NGN7 298 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 TOMM6Q96B49 74 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 CARD19Q96LW7 228 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 C20orf166-AS1Q96NR2 134 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 C2orf88Q9BSF0 95 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 PRADC1Q9BSG0 188 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 C20orf27Q9GZN8 174 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 TMEM126AQ9H061 195 aa2.37□□□□□ -2.03
HMGB1-207ENST00000468384 RBM7Q9Y580 266 aaKnown RBP2.37□□□□□ -2.03
HMGB1-207ENST00000468384 BORCS7-ASMTA0A0B4J1R7 106 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 DUXBA0A1W2PPF3 345 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 C20orf202A1L168 122 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms