RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 OPRPNQ99935 248 aaPredicted RBP4.05□□□□□ -1.76
USP39-213ENST00000467885 TIMM21Q9BVV7 248 aa4.05□□□□□ -1.76
USP39-213ENST00000467885 PYGO1Q9Y3Y4 419 aa4.05□□□□□ -1.76
USP39-213ENST00000467885 CSDC2Q9Y534 153 aaKnown RBP4.05□□□□□ -1.76
USP39-213ENST00000467885 DYNC2H1Q8NCM8 4307 aaKnown RBP4.04□□□□□ -1.76
USP39-213ENST00000467885 IGLV4-60A0A075B6I1 120 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 TRBV25-1A0A075B6N4 114 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.04□□□□□ -1.76
USP39-213ENST00000467885 IGKV2-29A2NJV5 120 aaPredicted RBP4.04□□□□□ -1.76
USP39-213ENST00000467885 TMEM262E9PQX1 116 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 HSBP1O75506 76 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 G0S2P27469 103 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 AMTP48728 403 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 CCL18P55774 89 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 GAGE6Q13070 117 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 C2orf66Q6UXQ4 117 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 ERASQ7Z444 233 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 PACRGQ96M98 296 aaPredicted RBP4.04□□□□□ -1.76
USP39-213ENST00000467885 UPK3BQ9BT76 320 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 TMEM243Q9BU79 118 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 Q9H8V8 135 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 CDC42SE2Q9NRR3 84 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 UBE2D4Q9Y2X8 147 aa4.04□□□□□ -1.76
USP39-213ENST00000467885 MRPS16Q9Y3D3 137 aaKnown RBP4.04□□□□□ -1.76
USP39-213ENST00000467885 TRAV8-6A0A0B4J262 113 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 DNAH10OSP0CZ25 163 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 FGF6P10767 208 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 FABP4P15090 132 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 BTF3P20290 206 aaKnown RBP4.03□□□□□ -1.76
USP39-213ENST00000467885 RBX1P62877 108 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 LGALS9CQ6DKI2 356 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 WFDC10BQ8IUB3 73 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 ZNF664Q8N3J9 261 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 Q8N976 141 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 SCGB3A1Q96QR1 104 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 CHCHD5Q9BSY4 110 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 CYSLTR1Q9Y271 337 aa4.03□□□□□ -1.76
USP39-213ENST00000467885 PRSS29PA6NIE9 313 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 LINC01549A6NIU2 74 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 H3BS24 57 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 SIVA1O15304 175 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 HBDP02042 147 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 S100A6P06703 90 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 MRPS36P82909 103 aaKnown RBP4.02□□□□□ -1.77
USP39-213ENST00000467885 ZC2HC1BQ5TFG8 222 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 ENHOQ6UWT2 76 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 TMEM18Q96B42 140 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 TMEM141Q96I45 108 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 AMELXQ99217 191 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 HIST1H2BLQ99880 126 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 CST9LQ9H4G1 147 aa4.02□□□□□ -1.77
USP39-213ENST00000467885 CSMD3Q7Z407 3707 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 IGLV4-3A0A075B6K6 122 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 IBA57-AS1B1ANH7 110 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 ATP5LO75964 103 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 LEPROTL1O95214 131 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 NPSP0C0P6 89 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 ZNF25P17030 456 aaPredicted RBP4.01□□□□□ -1.77
USP39-213ENST00000467885 MPV17L2Q567V2 206 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 LINC01556Q5JQF7 62 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 SPATA12Q7Z6I5 190 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 IFI27L1Q96BM0 104 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 TIMM17AQ99595 171 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 VCX2Q9H322 139 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 SPANXA1Q9NS26 97 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 PRR34Q9NV39 138 aa4.01□□□□□ -1.77
USP39-213ENST00000467885 A0A087WX48 190 aa4□□□□□ -1.77
USP39-213ENST00000467885 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4□□□□□ -1.77
USP39-213ENST00000467885 UBE2L6O14933 153 aa4□□□□□ -1.77
USP39-213ENST00000467885 IGHV3-30P01768 117 aa4□□□□□ -1.77
USP39-213ENST00000467885 IGHV3-33P01772 117 aa4□□□□□ -1.77
USP39-213ENST00000467885 PRSS1P07477 247 aa4□□□□□ -1.77
USP39-213ENST00000467885 C3orf79P0CE67 100 aa4□□□□□ -1.77
USP39-213ENST00000467885 IGHV3-30-3P0DP02 117 aa4□□□□□ -1.77
USP39-213ENST00000467885 IGHV3-30-5P0DP03 117 aa4□□□□□ -1.77
USP39-213ENST00000467885 COX6A2Q02221 97 aa4□□□□□ -1.77
USP39-213ENST00000467885 AMMECR1LQ6DCA0 310 aa4□□□□□ -1.77
USP39-213ENST00000467885 DGAT2L7PQ6IED9 249 aa4□□□□□ -1.77
USP39-213ENST00000467885 KRTAP26-1Q6PEX3 210 aa4□□□□□ -1.77
USP39-213ENST00000467885 LINC00269Q8N2A0 174 aa4□□□□□ -1.77
USP39-213ENST00000467885 OR5A1Q8NGJ0 315 aa4□□□□□ -1.77
USP39-213ENST00000467885 BAALCQ8WXS3 180 aa4□□□□□ -1.77
USP39-213ENST00000467885 KLK12Q9UKR0 248 aa4□□□□□ -1.77
USP39-213ENST00000467885 PLECQ15149 4684 aaKnown RBP4□□□□□ -1.77
USP39-213ENST00000467885 DNAH7Q8WXX0 4024 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 LINC00959A0A1B0GUT2 108 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 LOC105371267A0A1B0GV96 52 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 SYS1-DBNDD2H3BUS1 97 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 K7EP13 123 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 PKIAP61925 76 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 SMAGPQ0VAQ4 97 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 PMVKQ15126 192 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 RNASE13Q5GAN3 156 aaKnown RBP3.99□□□□□ -1.77
USP39-213ENST00000467885 Q6ZR54 194 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 Q6ZUT4 128 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 FAM19A3Q7Z5A8 133 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 TMEM101Q96IK0 257 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 KRTAP1-5Q9BYS1 174 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 HSPB8Q9UJY1 196 aa3.99□□□□□ -1.77
USP39-213ENST00000467885 VPS13DQ5THJ4 4388 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 331.3 ms