RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 UBE2D4Q9Y2X8 147 aa13.4□□□□□ -0.26
SKA3-205ENST00000465471 KIAA1109Q2LD37 5005 aa13.39□□□□□ -0.27
SKA3-205ENST00000465471 TGIF2-C20orf24A0A0A6YYL0 155 aa13.39□□□□□ -0.27
SKA3-205ENST00000465471 OR5A1Q8NGJ0 315 aa13.39□□□□□ -0.27
SKA3-205ENST00000465471 TMEM101Q96IK0 257 aa13.39□□□□□ -0.27
SKA3-205ENST00000465471 TIMM21Q9BVV7 248 aa13.39□□□□□ -0.27
SKA3-205ENST00000465471 CDC42SE2Q9NRR3 84 aa13.39□□□□□ -0.27
SKA3-205ENST00000465471 IGLV10-54A0A075B6I4 117 aa13.38□□□□□ -0.27
SKA3-205ENST00000465471 LECT2O14960 151 aa13.38□□□□□ -0.27
SKA3-205ENST00000465471 FUSP35637 526 aaKnown RBP eCLIP13.38□□□□□ -0.27
SKA3-205ENST00000465471 KIAA1644Q3SXP7 199 aa13.38□□□□□ -0.27
SKA3-205ENST00000465471 NTN5Q8WTR8 489 aaPredicted RBP13.38□□□□□ -0.27
SKA3-205ENST00000465471 YPEL4Q96NS1 127 aa13.38□□□□□ -0.27
SKA3-205ENST00000465471 Q8N8P6 123 aa13.37□□□□□ -0.27
SKA3-205ENST00000465471 TMEM18Q96B42 140 aa13.37□□□□□ -0.27
SKA3-205ENST00000465471 LOC389332A0A1B0GUA5 103 aa13.36□□□□□ -0.27
SKA3-205ENST00000465471 RPL39P62891 51 aaKnown RBP13.36□□□□□ -0.27
SKA3-205ENST00000465471 SMAGPQ0VAQ4 97 aa13.36□□□□□ -0.27
SKA3-205ENST00000465471 ZNF664Q8N3J9 261 aa13.36□□□□□ -0.27
SKA3-205ENST00000465471 MRPL18Q9H0U6 180 aaKnown RBP13.36□□□□□ -0.27
SKA3-205ENST00000465471 RAB5AP20339 215 aa13.35□□□□□ -0.27
SKA3-205ENST00000465471 ALKBH7Q9BT30 221 aaPredicted RBP13.35□□□□□ -0.27
SKA3-205ENST00000465471 K7EMI3 77 aa13.34□□□□□ -0.27
SKA3-205ENST00000465471 FAM104AQ969W3 186 aa13.34□□□□□ -0.27
SKA3-205ENST00000465471 NXT2Q9NPJ8 142 aaKnown RBP13.34□□□□□ -0.27
SKA3-205ENST00000465471 APOBP04114 4563 aaKnown RBP13.34□□□□□ -0.27
SKA3-205ENST00000465471 IGKV3OR2-268A0A0C4DH90 116 aa13.33□□□□□ -0.28
SKA3-205ENST00000465471 DGAT2L7PQ6IED9 249 aa13.33□□□□□ -0.28
SKA3-205ENST00000465471 SPANXA1Q9NS26 97 aa13.33□□□□□ -0.28
SKA3-205ENST00000465471 RYR1P21817 5038 aa13.32□□□□□ -0.28
SKA3-205ENST00000465471 LINC00959A0A1B0GUT2 108 aa13.32□□□□□ -0.28
SKA3-205ENST00000465471 USP17L23D6RBM5 183 aa13.32□□□□□ -0.28
SKA3-205ENST00000465471 IFI27P40305 119 aaPredicted RBP13.32□□□□□ -0.28
SKA3-205ENST00000465471 Q6ZUT4 128 aa13.32□□□□□ -0.28
SKA3-205ENST00000465471 CHCHD10Q8WYQ3 142 aaPredicted RBP13.32□□□□□ -0.28
SKA3-205ENST00000465471 HERC2O95714 4834 aa13.31□□□□□ -0.28
SKA3-205ENST00000465471 IGLV5-52A0A0A0MRZ9 124 aa13.31□□□□□ -0.28
SKA3-205ENST00000465471 FABP9Q0Z7S8 132 aa13.31□□□□□ -0.28
SKA3-205ENST00000465471 C14orf177Q52M58 125 aa13.31□□□□□ -0.28
SKA3-205ENST00000465471 MRPS36P82909 103 aaKnown RBP13.3□□□□□ -0.28
SKA3-205ENST00000465471 ORMDL2Q53FV1 153 aa13.3□□□□□ -0.28
SKA3-205ENST00000465471 CBLN2Q8IUK8 224 aa13.3□□□□□ -0.28
SKA3-205ENST00000465471 PYGO1Q9Y3Y4 419 aa13.3□□□□□ -0.28
SKA3-205ENST00000465471 GAGE12HA6NDE8 117 aa13.29□□□□□ -0.28
SKA3-205ENST00000465471 LINC01546A6NGU7 62 aa13.29□□□□□ -0.28
SKA3-205ENST00000465471 SMCO4Q9NRQ5 59 aa13.29□□□□□ -0.28
SKA3-205ENST00000465471 TRAPPC1Q9Y5R8 145 aa13.29□□□□□ -0.28
SKA3-205ENST00000465471 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.28□□□□□ -0.28
SKA3-205ENST00000465471 GCSHP23434 173 aa13.28□□□□□ -0.28
SKA3-205ENST00000465471 KRTAP10-1P60331 282 aa13.28□□□□□ -0.28
SKA3-205ENST00000465471 FOXI1Q12951 378 aa13.28□□□□□ -0.28
SKA3-205ENST00000465471 RNASE13Q5GAN3 156 aaKnown RBP13.28□□□□□ -0.28
SKA3-205ENST00000465471 CCL25O15444 150 aa13.27□□□□□ -0.29
SKA3-205ENST00000465471 CDK2AP2O75956 126 aa13.27□□□□□ -0.29
SKA3-205ENST00000465471 PRSS1P07477 247 aa13.27□□□□□ -0.29
SKA3-205ENST00000465471 C2orf66Q6UXQ4 117 aa13.27□□□□□ -0.29
SKA3-205ENST00000465471 DNAH8Q96JB1 4490 aa13.27□□□□□ -0.29
SKA3-205ENST00000465471 HSPG2P98160 4391 aa13.27□□□□□ -0.29
SKA3-205ENST00000465471 SS18Q15532 418 aa13.26□□□□□ -0.29
SKA3-205ENST00000465471 OPRPNQ99935 248 aaPredicted RBP13.26□□□□□ -0.29
SKA3-205ENST00000465471 CYSLTR1Q9Y271 337 aa13.26□□□□□ -0.29
SKA3-205ENST00000465471 XCL1P47992 114 aa13.25□□□□□ -0.29
SKA3-205ENST00000465471 C15orf56Q8N910 161 aa13.25□□□□□ -0.29
SKA3-205ENST00000465471 IGLV4-3A0A075B6K6 122 aa13.24□□□□□ -0.29
SKA3-205ENST00000465471 C1orf196B1AJZ1 125 aa13.24□□□□□ -0.29
SKA3-205ENST00000465471 CD164L2Q6UWJ8 174 aa13.24□□□□□ -0.29
SKA3-205ENST00000465471 PRSS3P2Q8NHM4 247 aa13.24□□□□□ -0.29
SKA3-205ENST00000465471 NPSP0C0P6 89 aa13.23□□□□□ -0.29
SKA3-205ENST00000465471 TRAV13-1A0A0B4J241 112 aa13.22□□□□□ -0.29
SKA3-205ENST00000465471 IGIPA6NJ69 53 aa13.22□□□□□ -0.29
SKA3-205ENST00000465471 C18orf32Q8TCD1 76 aa13.22□□□□□ -0.29
SKA3-205ENST00000465471 TOMM6Q96B49 74 aa13.22□□□□□ -0.29
SKA3-205ENST00000465471 G0S2P27469 103 aa13.21□□□□□ -0.29
SKA3-205ENST00000465471 TMEM141Q96I45 108 aa13.21□□□□□ -0.29
SKA3-205ENST00000465471 CNBPP62633 177 aaKnown RBP13.2□□□□□ -0.3
SKA3-205ENST00000465471 CFAP161Q6P656 301 aa13.2□□□□□ -0.3
SKA3-205ENST00000465471 URB1-AS1Q96HZ7 61 aa13.2□□□□□ -0.3
SKA3-205ENST00000465471 GVQW2A0A096LPI5 108 aaPredicted RBP13.19□□□□□ -0.3
SKA3-205ENST00000465471 hDV102S1A0JD36 115 aa13.19□□□□□ -0.3
SKA3-205ENST00000465471 IFITM10A6NMD0 228 aa13.19□□□□□ -0.3
SKA3-205ENST00000465471 LINC00173Q6ZV60 143 aa13.19□□□□□ -0.3
SKA3-205ENST00000465471 FA2HQ7L5A8 372 aa13.19□□□□□ -0.3
SKA3-205ENST00000465471 AMELXQ99217 191 aa13.19□□□□□ -0.3
SKA3-205ENST00000465471 TIMM17AQ99595 171 aa13.19□□□□□ -0.3
SKA3-205ENST00000465471 LINC01549A6NIU2 74 aa13.17□□□□□ -0.3
SKA3-205ENST00000465471 SLPIP03973 132 aa13.17□□□□□ -0.3
SKA3-205ENST00000465471 LINC01620Q4KN68 170 aa13.17□□□□□ -0.3
SKA3-205ENST00000465471 Q6ZSA8 131 aa13.17□□□□□ -0.3
SKA3-205ENST00000465471 IGHV1-58A0A0C4DH39 117 aa13.16□□□□□ -0.3
SKA3-205ENST00000465471 XGP55808 180 aa13.16□□□□□ -0.3
SKA3-205ENST00000465471 TEX43Q6ZNM6 134 aa13.16□□□□□ -0.3
SKA3-205ENST00000465471 C9orf163Q8N9P6 203 aa13.16□□□□□ -0.3
SKA3-205ENST00000465471 AP5S1Q9NUS5 200 aa13.16□□□□□ -0.3
SKA3-205ENST00000465471 A0A096LNJ9 63 aa13.15□□□□□ -0.3
SKA3-205ENST00000465471 IGHV3OR16-9A0A0B4J2B5 98 aa13.15□□□□□ -0.3
SKA3-205ENST00000465471 COLCA2A8K830 154 aa13.15□□□□□ -0.3
SKA3-205ENST00000465471 COX7A2LO14548 114 aa13.15□□□□□ -0.3
SKA3-205ENST00000465471 Q6ZN92 141 aa13.15□□□□□ -0.3
SKA3-205ENST00000465471 ERASQ7Z444 233 aa13.15□□□□□ -0.3
SKA3-205ENST00000465471 FAM30AQ9NZY2 134 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms