RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TMEM101Q96IK0 257 aa7.67□□□□□ -1.18
CUX1-207ENST00000465461 UBE2D4Q9Y2X8 147 aa7.67□□□□□ -1.18
CUX1-207ENST00000465461 IGLV5-52A0A0A0MRZ9 124 aa7.66□□□□□ -1.18
CUX1-207ENST00000465461 ZNF25P17030 456 aaPredicted RBP7.66□□□□□ -1.18
CUX1-207ENST00000465461 KRTAP10-1P60331 282 aa7.66□□□□□ -1.18
CUX1-207ENST00000465461 OPRPNQ99935 248 aaPredicted RBP7.66□□□□□ -1.18
CUX1-207ENST00000465461 MAP1LC3AQ9H492 121 aa7.66□□□□□ -1.18
CUX1-207ENST00000465461 CDC42SE2Q9NRR3 84 aa7.66□□□□□ -1.18
CUX1-207ENST00000465461 GAGE12HA6NDE8 117 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 PRSS47A8MTI9 375 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 USP17L23D6RBM5 183 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 PKHD1P08F94 4074 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 LINC01620Q4KN68 170 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 DGAT2L7PQ6IED9 249 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 MRPL52Q86TS9 123 aaKnown RBP7.65□□□□□ -1.18
CUX1-207ENST00000465461 ZNF664Q8N3J9 261 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 GNB1LQ9BYB4 327 aa7.65□□□□□ -1.18
CUX1-207ENST00000465461 MRPL18Q9H0U6 180 aaKnown RBP7.65□□□□□ -1.18
CUX1-207ENST00000465461 TRAV8-4A0A0B4J246 113 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 LINC00959A0A1B0GUT2 108 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 RAB5AP20339 215 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 GCSHP23434 173 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 IFI27P40305 119 aaPredicted RBP7.64□□□□□ -1.19
CUX1-207ENST00000465461 FABP9Q0Z7S8 132 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 CDPF1Q6NVV7 123 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 Q6ZUT4 128 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 Q8N8P6 123 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 CHCHD10Q8WYQ3 142 aaPredicted RBP7.64□□□□□ -1.19
CUX1-207ENST00000465461 FAM104AQ969W3 186 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 LAMTOR2Q9Y2Q5 125 aa7.64□□□□□ -1.19
CUX1-207ENST00000465461 XCL1P47992 114 aa7.63□□□□□ -1.19
CUX1-207ENST00000465461 NTN5Q8WTR8 489 aaPredicted RBP7.63□□□□□ -1.19
CUX1-207ENST00000465461 TMEM18Q96B42 140 aa7.63□□□□□ -1.19
CUX1-207ENST00000465461 ALKBH7Q9BT30 221 aaPredicted RBP7.63□□□□□ -1.19
CUX1-207ENST00000465461 CCL25O15444 150 aa7.62□□□□□ -1.19
CUX1-207ENST00000465461 PRSS1P07477 247 aa7.62□□□□□ -1.19
CUX1-207ENST00000465461 CBLN2Q8IUK8 224 aa7.62□□□□□ -1.19
CUX1-207ENST00000465461 YPEL4Q96NS1 127 aa7.62□□□□□ -1.19
CUX1-207ENST00000465461 KRTAP17-1Q9BYP8 105 aa7.62□□□□□ -1.19
CUX1-207ENST00000465461 TRAPPC1Q9Y5R8 145 aa7.62□□□□□ -1.19
CUX1-207ENST00000465461 DNAH5Q8TE73 4624 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 TRAV13-1A0A0B4J241 112 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 HAMPP81172 84 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 FOXI1Q12951 378 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 COX19Q49B96 90 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 TIMM21Q9BVV7 248 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 CSDC2Q9Y534 153 aaKnown RBP7.61□□□□□ -1.19
CUX1-207ENST00000465461 KIAA1109Q2LD37 5005 aa7.61□□□□□ -1.19
CUX1-207ENST00000465461 MT-ND6P03923 174 aa7.6□□□□□ -1.19
CUX1-207ENST00000465461 SS18Q15532 418 aa7.6□□□□□ -1.19
CUX1-207ENST00000465461 HIGD2BQ4VC39 106 aa7.6□□□□□ -1.19
CUX1-207ENST00000465461 C2orf66Q6UXQ4 117 aa7.6□□□□□ -1.19
CUX1-207ENST00000465461 PRSS3P2Q8NHM4 247 aa7.6□□□□□ -1.19
CUX1-207ENST00000465461 FAM30AQ9NZY2 134 aa7.6□□□□□ -1.19
CUX1-207ENST00000465461 LRP1BQ9NZR2 4599 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 hDV102S1A0JD36 115 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 SMAGPQ0VAQ4 97 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 C14orf177Q52M58 125 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 ZC2HC1BQ5TFG8 222 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 C15orf56Q8N910 161 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 NXT2Q9NPJ8 142 aaKnown RBP7.59□□□□□ -1.19
CUX1-207ENST00000465461 SPANXA1Q9NS26 97 aa7.59□□□□□ -1.19
CUX1-207ENST00000465461 IGLV4-3A0A075B6K6 122 aa7.58□□□□□ -1.2
CUX1-207ENST00000465461 SLPIP03973 132 aa7.58□□□□□ -1.2
CUX1-207ENST00000465461 XGP55808 180 aa7.58□□□□□ -1.2
CUX1-207ENST00000465461 ORMDL2Q53FV1 153 aa7.58□□□□□ -1.2
CUX1-207ENST00000465461 SMCO4Q9NRQ5 59 aa7.58□□□□□ -1.2
CUX1-207ENST00000465461 CYSLTR1Q9Y271 337 aa7.58□□□□□ -1.2
CUX1-207ENST00000465461 CDK2AP2O75956 126 aa7.57□□□□□ -1.2
CUX1-207ENST00000465461 MRPS36P82909 103 aaKnown RBP7.57□□□□□ -1.2
CUX1-207ENST00000465461 LCE2AQ5TA79 106 aaPredicted RBP7.57□□□□□ -1.2
CUX1-207ENST00000465461 LINC00526Q96FQ7 95 aa7.57□□□□□ -1.2
CUX1-207ENST00000465461 C1orf196B1AJZ1 125 aa7.56□□□□□ -1.2
CUX1-207ENST00000465461 CD164L2Q6UWJ8 174 aa7.56□□□□□ -1.2
CUX1-207ENST00000465461 C5orf38Q86SI9 138 aa7.56□□□□□ -1.2
CUX1-207ENST00000465461 URB1-AS1Q96HZ7 61 aa7.56□□□□□ -1.2
CUX1-207ENST00000465461 PYGO1Q9Y3Y4 419 aa7.56□□□□□ -1.2
CUX1-207ENST00000465461 IGIPA6NJ69 53 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 IFITM10A6NMD0 228 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 K7EMI3 77 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 SCO1O75880 301 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 CFAP161Q6P656 301 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 FA2HQ7L5A8 372 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 C18orf32Q8TCD1 76 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 TMEM141Q96I45 108 aa7.55□□□□□ -1.2
CUX1-207ENST00000465461 LINC01546A6NGU7 62 aa7.54□□□□□ -1.2
CUX1-207ENST00000465461 COX6A2Q02221 97 aa7.54□□□□□ -1.2
CUX1-207ENST00000465461 LINC00173Q6ZV60 143 aa7.54□□□□□ -1.2
CUX1-207ENST00000465461 TOMM6Q96B49 74 aa7.54□□□□□ -1.2
CUX1-207ENST00000465461 COX7A2LO14548 114 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 SMR3BP02814 79 aaPredicted RBP7.53□□□□□ -1.2
CUX1-207ENST00000465461 MALP21145 153 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 PMCHL1Q16048 86 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 TEX43Q6ZNM6 134 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 C9orf163Q8N9P6 203 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 KRTAP4-5Q9BYR2 181 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 AP5S1Q9NUS5 200 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 HERC2O95714 4834 aa7.53□□□□□ -1.2
CUX1-207ENST00000465461 APOBP04114 4563 aaKnown RBP7.52□□□□□ -1.21
CUX1-207ENST00000465461 GVQW2A0A096LPI5 108 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms