RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C20orf203Q8NBC4 194 aa11.78□□□□□ -0.52
COL7A1-205ENST00000465238 TMEM101Q96IK0 257 aa11.78□□□□□ -0.52
COL7A1-205ENST00000465238 FAT1Q14517 4588 aa11.77□□□□□ -0.52
COL7A1-205ENST00000465238 LOC389332A0A1B0GUA5 103 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 PRSS47A8MTI9 375 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 RAB5AP20339 215 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 REG3AQ06141 175 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 MIAQ16674 131 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 CLPSL2Q6UWE3 100 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 C1orf43Q9BWL3 253 aa11.77□□□□□ -0.53
COL7A1-205ENST00000465238 ZNF25P17030 456 aaPredicted RBP11.76□□□□□ -0.53
COL7A1-205ENST00000465238 GCSHP23434 173 aa11.76□□□□□ -0.53
COL7A1-205ENST00000465238 SMAGPQ0VAQ4 97 aa11.76□□□□□ -0.53
COL7A1-205ENST00000465238 FABP9Q0Z7S8 132 aa11.76□□□□□ -0.53
COL7A1-205ENST00000465238 TMEM18Q96B42 140 aa11.76□□□□□ -0.53
COL7A1-205ENST00000465238 MRPL18Q9H0U6 180 aaKnown RBP11.76□□□□□ -0.53
COL7A1-205ENST00000465238 PRR34Q9NV39 138 aa11.76□□□□□ -0.53
COL7A1-205ENST00000465238 DMBT1Q9UGM3 2413 aaPredicted RBP11.75□□□□□ -0.53
COL7A1-205ENST00000465238 DGAT2L7PQ6IED9 249 aa11.75□□□□□ -0.53
COL7A1-205ENST00000465238 OR5A1Q8NGJ0 315 aa11.75□□□□□ -0.53
COL7A1-205ENST00000465238 SMCO4Q9NRQ5 59 aa11.75□□□□□ -0.53
COL7A1-205ENST00000465238 INAFM2P0DMQ5 153 aa11.74□□□□□ -0.53
COL7A1-205ENST00000465238 Q5VSD8 79 aa11.74□□□□□ -0.53
COL7A1-205ENST00000465238 Q8N8P6 123 aa11.74□□□□□ -0.53
COL7A1-205ENST00000465238 TRAPPC1Q9Y5R8 145 aa11.74□□□□□ -0.53
COL7A1-205ENST00000465238 HERC1Q15751 4861 aa11.74□□□□□ -0.53
COL7A1-205ENST00000465238 LRCOL1A6NCL2 159 aa11.73□□□□□ -0.53
COL7A1-205ENST00000465238 VPS13BQ7Z7G8 4022 aa11.73□□□□□ -0.53
COL7A1-205ENST00000465238 MRPL52Q86TS9 123 aaKnown RBP11.73□□□□□ -0.53
COL7A1-205ENST00000465238 NTN5Q8WTR8 489 aaPredicted RBP11.73□□□□□ -0.53
COL7A1-205ENST00000465238 SRRM2Q9UQ35 2752 aaKnown RBP11.73□□□□□ -0.53
COL7A1-205ENST00000465238 IGLV5-52A0A0A0MRZ9 124 aa11.72□□□□□ -0.53
COL7A1-205ENST00000465238 TRAV8-4A0A0B4J246 113 aa11.72□□□□□ -0.53
COL7A1-205ENST00000465238 IGKV3OR2-268A0A0C4DH90 116 aa11.72□□□□□ -0.53
COL7A1-205ENST00000465238 NXT2Q9NPJ8 142 aaKnown RBP11.72□□□□□ -0.53
COL7A1-205ENST00000465238 CBLN2Q8IUK8 224 aa11.71□□□□□ -0.53
COL7A1-205ENST00000465238 ALKBH7Q9BT30 221 aaPredicted RBP11.71□□□□□ -0.53
COL7A1-205ENST00000465238 IGLV10-54A0A075B6I4 117 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 ZNF664Q8N3J9 261 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 BAALCQ8WXS3 180 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 YPEL4Q96NS1 127 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 TIMM21Q9BVV7 248 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 CDC42SE2Q9NRR3 84 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 UBE2D4Q9Y2X8 147 aa11.7□□□□□ -0.54
COL7A1-205ENST00000465238 K7EMI3 77 aa11.69□□□□□ -0.54
COL7A1-205ENST00000465238 IFI27P40305 119 aaPredicted RBP11.69□□□□□ -0.54
COL7A1-205ENST00000465238 RPL39P62891 51 aaKnown RBP11.69□□□□□ -0.54
COL7A1-205ENST00000465238 Q8N814 137 aa11.69□□□□□ -0.54
COL7A1-205ENST00000465238 PRSS3P2Q8NHM4 247 aa11.69□□□□□ -0.54
COL7A1-205ENST00000465238 CSDC2Q9Y534 153 aaKnown RBP11.69□□□□□ -0.54
COL7A1-205ENST00000465238 ORMDL2Q53FV1 153 aa11.68□□□□□ -0.54
COL7A1-205ENST00000465238 LECT2O14960 151 aa11.67□□□□□ -0.54
COL7A1-205ENST00000465238 SMR3BP02814 79 aaPredicted RBP11.67□□□□□ -0.54
COL7A1-205ENST00000465238 SPANXA1Q9NS26 97 aa11.67□□□□□ -0.54
COL7A1-205ENST00000465238 FAM229AH3BQW9 127 aa11.66□□□□□ -0.54
COL7A1-205ENST00000465238 MYCBP2O75592 4640 aa11.66□□□□□ -0.54
COL7A1-205ENST00000465238 FLG2Q5D862 2391 aaPredicted RBP11.65□□□□□ -0.54
COL7A1-205ENST00000465238 G0S2P27469 103 aa11.65□□□□□ -0.54
COL7A1-205ENST00000465238 WFDC2Q14508 124 aa11.65□□□□□ -0.54
COL7A1-205ENST00000465238 SS18Q15532 418 aa11.65□□□□□ -0.54
COL7A1-205ENST00000465238 KRTAP26-1Q6PEX3 210 aa11.65□□□□□ -0.54
COL7A1-205ENST00000465238 CYSLTR1Q9Y271 337 aa11.65□□□□□ -0.54
COL7A1-205ENST00000465238 LINC00959A0A1B0GUT2 108 aa11.64□□□□□ -0.55
COL7A1-205ENST00000465238 C2orf66Q6UXQ4 117 aa11.64□□□□□ -0.55
COL7A1-205ENST00000465238 CHCHD10Q8WYQ3 142 aaPredicted RBP11.64□□□□□ -0.55
COL7A1-205ENST00000465238 GAGE12HA6NDE8 117 aa11.63□□□□□ -0.55
COL7A1-205ENST00000465238 HAMPP81172 84 aa11.63□□□□□ -0.55
COL7A1-205ENST00000465238 C14orf177Q52M58 125 aa11.63□□□□□ -0.55
COL7A1-205ENST00000465238 RNASE13Q5GAN3 156 aaKnown RBP11.63□□□□□ -0.55
COL7A1-205ENST00000465238 Q6ZUT4 128 aa11.63□□□□□ -0.55
COL7A1-205ENST00000465238 FA2HQ7L5A8 372 aa11.63□□□□□ -0.55
COL7A1-205ENST00000465238 PYGO1Q9Y3Y4 419 aa11.63□□□□□ -0.55
COL7A1-205ENST00000465238 MRPS36P82909 103 aaKnown RBP11.62□□□□□ -0.55
COL7A1-205ENST00000465238 DNAH8Q96JB1 4490 aa11.61□□□□□ -0.55
COL7A1-205ENST00000465238 USP17L23D6RBM5 183 aa11.61□□□□□ -0.55
COL7A1-205ENST00000465238 CCL25O15444 150 aa11.61□□□□□ -0.55
COL7A1-205ENST00000465238 OPRPNQ99935 248 aaPredicted RBP11.61□□□□□ -0.55
COL7A1-205ENST00000465238 TRAV13-1A0A0B4J241 112 aa11.6□□□□□ -0.55
COL7A1-205ENST00000465238 C1orf196B1AJZ1 125 aa11.6□□□□□ -0.55
COL7A1-205ENST00000465238 XCL1P47992 114 aa11.6□□□□□ -0.55
COL7A1-205ENST00000465238 C18orf32Q8TCD1 76 aa11.6□□□□□ -0.55
COL7A1-205ENST00000465238 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.59□□□□□ -0.55
COL7A1-205ENST00000465238 LINC01546A6NGU7 62 aa11.59□□□□□ -0.55
COL7A1-205ENST00000465238 FAM30AQ9NZY2 134 aa11.59□□□□□ -0.55
COL7A1-205ENST00000465238 COLCA2A8K830 154 aa11.58□□□□□ -0.56
COL7A1-205ENST00000465238 FAM104AQ969W3 186 aa11.58□□□□□ -0.56
COL7A1-205ENST00000465238 TMEM141Q96I45 108 aa11.58□□□□□ -0.56
COL7A1-205ENST00000465238 IGLV4-3A0A075B6K6 122 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 LINC01549A6NIU2 74 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 LINC00614P0C842 121 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 RAB5BP61020 215 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 FOXI1Q12951 378 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 CFAP161Q6P656 301 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 CD164L2Q6UWJ8 174 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 Q6ZN92 141 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 TOMM6Q96B49 74 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 AP5S1Q9NUS5 200 aa11.57□□□□□ -0.56
COL7A1-205ENST00000465238 IFITM10A6NMD0 228 aa11.56□□□□□ -0.56
COL7A1-205ENST00000465238 SCO1O75880 301 aa11.56□□□□□ -0.56
COL7A1-205ENST00000465238 NPSP0C0P6 89 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms