RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 PSENENQ9NZ42 101 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 KCNIP3Q9Y2W7 256 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 KRBOX1C9JBD0 128 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 TMEM238C9JI98 176 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 NCR2O95944 276 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 METTL15P1P0C7V9 234 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 SLC25A6P12236 298 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 RPL29P47914 159 aaKnown RBP1.13□□□□□ -2.23
USP40-211ENST00000464956 UBE2L3P68036 154 aaKnown RBP1.13□□□□□ -2.23
USP40-211ENST00000464956 IL18Q14116 193 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 SCGB2B2Q4G0G5 96 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 SPANXN2Q5MJ10 180 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 SPANXN1Q5VSR9 72 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 KRTAP5-4Q6L8H1 288 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 RASL11AQ6T310 242 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 HRCT1Q6UXD1 115 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 AKAP14Q86UN6 197 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 S100A16Q96FQ6 103 aaKnown RBP1.13□□□□□ -2.23
USP40-211ENST00000464956 FAM167A-AS1Q96KT0 104 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 AP1S3Q96PC3 154 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 NIT2Q9NQR4 276 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 CDC42SE2Q9NRR3 84 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 PRO2289Q9P1D8 64 aa1.13□□□□□ -2.23
USP40-211ENST00000464956 IGLV5-37A0A075B6J1 123 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 M0R378 163 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 ANXA3P12429 323 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 FOXA3P55318 350 aaPredicted RBP1.12□□□□□ -2.23
USP40-211ENST00000464956 GNG5P63218 68 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 FLI1Q01543 452 aaPredicted RBP1.12□□□□□ -2.23
USP40-211ENST00000464956 C2orf82Q6UX34 121 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 MIR17HGQ75NE6 70 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 OR5H6Q8NGV6 325 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 RTBDNQ9BSG5 229 aaPredicted RBP1.12□□□□□ -2.23
USP40-211ENST00000464956 FUNDC2Q9BWH2 189 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 KRTAP9-9Q9BYP9 154 aa1.12□□□□□ -2.23
USP40-211ENST00000464956 TMSB15BA0A087X1C1 80 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 SSSCA1O60232 199 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 TMEM127O75204 238 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 KRTAP5-8O75690 187 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 ERC2-IT1O76042 136 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 CALB2P22676 271 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 CKS1BP61024 79 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 SSTP61278 116 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 BAXQ07812 192 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 SMAGPQ0VAQ4 97 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 MLLT11Q13015 90 aaPredicted RBP1.11□□□□□ -2.23
USP40-211ENST00000464956 C1orf195Q5TG92 126 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 SUMO4Q6EEV6 95 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 TMEM14EPQ6UXP3 125 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 MRPL52Q86TS9 123 aaKnown RBP1.11□□□□□ -2.23
USP40-211ENST00000464956 OR10AG1Q8NH19 301 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 MRAP2Q96G30 205 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 SMIM8Q96KF7 97 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 MRPS26Q9BYN8 205 aaKnown RBP1.11□□□□□ -2.23
USP40-211ENST00000464956 KRTAP4-11Q9BYQ6 195 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 KRTAP4-8Q9BYQ9 185 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 KRTAP3-3Q9BYR6 98 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 KRTAP3-2Q9BYR7 98 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 NDUFB11Q9NX14 153 aa1.11□□□□□ -2.23
USP40-211ENST00000464956 LSM2Q9Y333 95 aaKnown RBP1.11□□□□□ -2.23
USP40-211ENST00000464956 FAM236AA0A1B0GUQ0 79 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 FAM236BA0A1B0GV22 79 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 SH2D1AO60880 128 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 CD3DP04234 171 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 PRSS2P07478 247 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 TAS2R45P59539 299 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 TAS2R30P59541 319 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 KRTAP12-2P59991 146 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 KIAA0087Q14695 138 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 Q1RN00 199 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 KHDC3LQ587J8 217 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 GCSAMLQ5JQS6 135 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 C22orf42Q6IC83 251 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 PCP2Q8IVA1 136 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 C5orf17Q8NAS9 161 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 SMCR5Q8TEV8 140 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 ANP32BQ92688 251 aaKnown RBP1.1□□□□□ -2.23
USP40-211ENST00000464956 RAB24Q969Q5 203 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 OBSCN-AS1Q96MR7 158 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 SPRR2GQ9BYE4 73 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 MBD2Q9UBB5 411 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 WDR83OSQ9Y284 106 aa1.1□□□□□ -2.23
USP40-211ENST00000464956 TGIF2-C20orf24A0A0A6YYL0 155 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 IGHV3OR16-9A0A0B4J2B5 98 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 MUC21A0A140T8X8 626 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 UBE2L5PA0A1B0GUS4 154 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 SMIM31A0A1B0GVY4 71 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 TRDV1A0A1B0GX56 115 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 FAM25EA8MYX2 175 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 SCO1O75880 301 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 DEFA3P59666 94 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 ID3Q02535 119 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 KRTAP20-2Q3LI61 65 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 RNASE13Q5GAN3 156 aaKnown RBP1.09□□□□□ -2.23
USP40-211ENST00000464956 UBE2NLQ5JXB2 153 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 SMIM29Q86T20 159 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 NUDT10Q8NFP7 164 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 NUDT11Q96G61 164 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 FAM218AQ96MZ4 157 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 C9orf16Q9BUW7 83 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms