RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 PMVKQ15126 192 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 SPANXN1Q5VSR9 72 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 TMEM136Q6ZRR5 245 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 ATP5L2Q7Z4Y8 100 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 BTF3L4Q96K17 158 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 FAM210BQ96KR6 192 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 C12orf57Q99622 126 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 OPRPNQ99935 248 aaPredicted RBP3.21□□□□□ -1.9
CSMD3-205ENST00000462254 TM2D3Q9BRN9 247 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 MRPL16Q9NX20 251 aaKnown RBP3.21□□□□□ -1.9
CSMD3-205ENST00000462254 PHLDA3Q9Y5J5 127 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 NBEAL2Q6ZNJ1 2754 aa3.21□□□□□ -1.9
CSMD3-205ENST00000462254 A0A0J9YXY3 114 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 M0R2P5 195 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 MIFP14174 115 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 EVI2AP22794 236 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 AKR1D1P51857 326 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 RAB5BP61020 215 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 DEFA6Q01524 100 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 DAZ2Q13117 558 aaKnown RBP3.2□□□□□ -1.9
CSMD3-205ENST00000462254 C6orf99Q4VX62 202 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 RASL11AQ6T310 242 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 Q6ZTI0 123 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 POM121L12Q8N7R1 296 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 BORCS7Q96B45 105 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 SAMD10Q9BYL1 202 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 NOP10Q9NPE3 64 aaKnown RBP3.2□□□□□ -1.9
CSMD3-205ENST00000462254 CELA1Q9UNI1 258 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 KIF25-AS1Q9Y6Z4 181 aa3.2□□□□□ -1.9
CSMD3-205ENST00000462254 TRGV1A0A0A0MS02 117 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 IGHV6-1A0A0B4J1U7 121 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 PHOX2AO14813 284 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 GAS8-AS1O95177 125 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 HLA-DQA1P01909 254 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 TRGC2P03986 189 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 CRYGDP07320 174 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 TRGC1P0CF51 173 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 RPS10P46783 165 aaKnown RBP3.19□□□□□ -1.9
CSMD3-205ENST00000462254 EMP1P54849 157 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 LINC00315P59091 139 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 C1orf195Q5TG92 126 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 FAM222AQ5U5X8 452 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 AMN1Q8IY45 258 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 LINC00612Q8N6U2 182 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 C14orf178Q8N769 122 aaPredicted RBP3.19□□□□□ -1.9
CSMD3-205ENST00000462254 AP1S3Q96PC3 154 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 B9D2Q9BPU9 175 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 GNB1LQ9BYB4 327 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 TMEM191AQ9H0A3 160 aa3.19□□□□□ -1.9
CSMD3-205ENST00000462254 HUWE1Q7Z6Z7 4374 aaKnown RBP3.19□□□□□ -1.9
CSMD3-205ENST00000462254 IGHV3-73A0A0B4J1V6 119 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 TRAV26-2A0A0B4J265 109 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 TRAV4A0A0B4J268 109 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 A0A0J9YWU9 116 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 C1orf196B1AJZ1 125 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 MT-ND6P03923 174 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 MGPP08493 103 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 LINC00614P0C842 121 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 FABP9Q0Z7S8 132 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 LGALS9BQ3B8N2 356 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 MRPL51Q4U2R6 128 aaKnown RBP3.18□□□□□ -1.9
CSMD3-205ENST00000462254 ORMDL2Q53FV1 153 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 TMEM97Q5BJF2 176 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 FAM74A4Q5TZK3 123 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 CFAP126Q5VTH2 177 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 FAM104BQ5XKR9 115 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 FRZBQ92765 325 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 FAM104AQ969W3 186 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 TMEM243Q9BU79 118 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 C11orf68Q9H3H3 251 aaKnown RBP3.18□□□□□ -1.9
CSMD3-205ENST00000462254 DPH3P1Q9H4G8 78 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 TRAPPC1Q9Y5R8 145 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 DNAH9Q9NYC9 4486 aa3.18□□□□□ -1.9
CSMD3-205ENST00000462254 A8MWV9 139 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 D6R8Y8 96 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 C8orf87E5RJ46 101 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 NCR2O95944 276 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 NPYP01303 97 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 IGHV3-53P01767 116 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 APCSP02743 223 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 DEFB130BP0DP73 79 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 DEFB130AP0DP74 79 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 MT3P25713 68 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 ZNF56Q15929 161 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 LINC00337Q8N6G1 96 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 C18orf15Q96N68 181 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 U3KQK5 164 aa3.17□□□□□ -1.9
CSMD3-205ENST00000462254 PRKDCP78527 4128 aaKnown RBP3.17□□□□□ -1.9
CSMD3-205ENST00000462254 TRGV2A0A075B6R0 118 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 HIST1H2BKO60814 126 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 HIST1H2BJP06899 126 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 SPART-AS1P0CW21 52 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 SMIM17P0DL12 118 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 P0DMU3 169 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 FAM231AP0DMU4 169 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 FAM231CP0DMU5 169 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 HIST1H2BOP23527 126 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 SRIP30626 198 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 HIST1H2BBP33778 126 aa3.16□□□□□ -1.9
CSMD3-205ENST00000462254 HIST1H2BDP58876 126 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms