RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 Q8N8P6 123 aa18.49■□□□□ 0.55
SMARCC1-203ENST00000454240 YPEL4Q96NS1 127 aa18.49■□□□□ 0.55
SMARCC1-203ENST00000454240 MRPL18Q9H0U6 180 aaKnown RBP18.49■□□□□ 0.55
SMARCC1-203ENST00000454240 CDC42SE2Q9NRR3 84 aa18.49■□□□□ 0.55
SMARCC1-203ENST00000454240 PGPEP1Q9NXJ5 209 aa18.49■□□□□ 0.55
SMARCC1-203ENST00000454240 DNAH5Q8TE73 4624 aa18.49■□□□□ 0.55
SMARCC1-203ENST00000454240 IGLV10-54A0A075B6I4 117 aa18.48■□□□□ 0.55
SMARCC1-203ENST00000454240 RAB5AP20339 215 aa18.48■□□□□ 0.55
SMARCC1-203ENST00000454240 SMAGPQ0VAQ4 97 aa18.48■□□□□ 0.55
SMARCC1-203ENST00000454240 Q8N814 137 aa18.48■□□□□ 0.55
SMARCC1-203ENST00000454240 TIMM21Q9BVV7 248 aa18.47■□□□□ 0.55
SMARCC1-203ENST00000454240 C16orf90A8MZG2 172 aa18.46■□□□□ 0.55
SMARCC1-203ENST00000454240 LECT2O14960 151 aa18.46■□□□□ 0.55
SMARCC1-203ENST00000454240 FABP9Q0Z7S8 132 aa18.46■□□□□ 0.55
SMARCC1-203ENST00000454240 ZNF664Q8N3J9 261 aa18.46■□□□□ 0.55
SMARCC1-203ENST00000454240 ALKBH7Q9BT30 221 aaPredicted RBP18.46■□□□□ 0.55
SMARCC1-203ENST00000454240 RPL39P62891 51 aaKnown RBP18.45■□□□□ 0.54
SMARCC1-203ENST00000454240 DGAT2L7PQ6IED9 249 aa18.45■□□□□ 0.54
SMARCC1-203ENST00000454240 NXT2Q9NPJ8 142 aaKnown RBP18.45■□□□□ 0.54
SMARCC1-203ENST00000454240 IGKV3OR2-268A0A0C4DH90 116 aa18.44■□□□□ 0.54
SMARCC1-203ENST00000454240 FUSP35637 526 aaKnown RBP eCLIP18.44■□□□□ 0.54
SMARCC1-203ENST00000454240 CDPF1Q6NVV7 123 aa18.44■□□□□ 0.54
SMARCC1-203ENST00000454240 K7EMI3 77 aa18.43■□□□□ 0.54
SMARCC1-203ENST00000454240 IFI27P40305 119 aaPredicted RBP18.43■□□□□ 0.54
SMARCC1-203ENST00000454240 SMCO4Q9NRQ5 59 aa18.43■□□□□ 0.54
SMARCC1-203ENST00000454240 TRAPPC1Q9Y5R8 145 aa18.43■□□□□ 0.54
SMARCC1-203ENST00000454240 CBLN2Q8IUK8 224 aa18.41■□□□□ 0.54
SMARCC1-203ENST00000454240 NTN5Q8WTR8 489 aaPredicted RBP18.41■□□□□ 0.54
SMARCC1-203ENST00000454240 LRP1BQ9NZR2 4599 aa18.4■□□□□ 0.54
SMARCC1-203ENST00000454240 SPANXA1Q9NS26 97 aa18.4■□□□□ 0.54
SMARCC1-203ENST00000454240 LINC00959A0A1B0GUT2 108 aa18.39■□□□□ 0.53
SMARCC1-203ENST00000454240 ORMDL2Q53FV1 153 aa18.39■□□□□ 0.53
SMARCC1-203ENST00000454240 Q6ZUT4 128 aa18.38■□□□□ 0.53
SMARCC1-203ENST00000454240 CHCHD10Q8WYQ3 142 aaPredicted RBP18.38■□□□□ 0.53
SMARCC1-203ENST00000454240 FAM104AQ969W3 186 aa18.38■□□□□ 0.53
SMARCC1-203ENST00000454240 USP17L23D6RBM5 183 aa18.37■□□□□ 0.53
SMARCC1-203ENST00000454240 GAGE12HA6NDE8 117 aa18.36■□□□□ 0.53
SMARCC1-203ENST00000454240 PRSS3P2Q8NHM4 247 aa18.36■□□□□ 0.53
SMARCC1-203ENST00000454240 PYGO1Q9Y3Y4 419 aa18.36■□□□□ 0.53
SMARCC1-203ENST00000454240 IGLV5-52A0A0A0MRZ9 124 aa18.35■□□□□ 0.53
SMARCC1-203ENST00000454240 MRPS36P82909 103 aaKnown RBP18.35■□□□□ 0.53
SMARCC1-203ENST00000454240 C14orf177Q52M58 125 aa18.35■□□□□ 0.53
SMARCC1-203ENST00000454240 RNASE13Q5GAN3 156 aaKnown RBP18.35■□□□□ 0.53
SMARCC1-203ENST00000454240 SS18Q15532 418 aa18.34■□□□□ 0.53
SMARCC1-203ENST00000454240 C2orf66Q6UXQ4 117 aa18.34■□□□□ 0.53
SMARCC1-203ENST00000454240 CYSLTR1Q9Y271 337 aa18.34■□□□□ 0.53
SMARCC1-203ENST00000454240 IGLV2-33A0A075B6J2 118 aaPredicted RBP18.33■□□□□ 0.52
SMARCC1-203ENST00000454240 LINC01546A6NGU7 62 aa18.33■□□□□ 0.52
SMARCC1-203ENST00000454240 OPRPNQ99935 248 aaPredicted RBP18.33■□□□□ 0.52
SMARCC1-203ENST00000454240 CCL25O15444 150 aa18.32■□□□□ 0.52
SMARCC1-203ENST00000454240 FOXI1Q12951 378 aa18.31■□□□□ 0.52
SMARCC1-203ENST00000454240 C1orf196B1AJZ1 125 aa18.3■□□□□ 0.52
SMARCC1-203ENST00000454240 GCSHP23434 173 aa18.3■□□□□ 0.52
SMARCC1-203ENST00000454240 G0S2P27469 103 aa18.3■□□□□ 0.52
SMARCC1-203ENST00000454240 XCL1P47992 114 aa18.3■□□□□ 0.52
SMARCC1-203ENST00000454240 PRSS1P07477 247 aa18.29■□□□□ 0.52
SMARCC1-203ENST00000454240 C18orf32Q8TCD1 76 aa18.29■□□□□ 0.52
SMARCC1-203ENST00000454240 IGLV4-3A0A075B6K6 122 aa18.28■□□□□ 0.52
SMARCC1-203ENST00000454240 CD164L2Q6UWJ8 174 aa18.28■□□□□ 0.52
SMARCC1-203ENST00000454240 TRAV13-1A0A0B4J241 112 aa18.27■□□□□ 0.52
SMARCC1-203ENST00000454240 KRTAP10-1P60331 282 aa18.27■□□□□ 0.52
SMARCC1-203ENST00000454240 IGIPA6NJ69 53 aa18.26■□□□□ 0.51
SMARCC1-203ENST00000454240 FA2HQ7L5A8 372 aa18.26■□□□□ 0.51
SMARCC1-203ENST00000454240 TOMM6Q96B49 74 aa18.26■□□□□ 0.51
SMARCC1-203ENST00000454240 KIAA1109Q2LD37 5005 aa18.26■□□□□ 0.51
SMARCC1-203ENST00000454240 NPSP0C0P6 89 aa18.25■□□□□ 0.51
SMARCC1-203ENST00000454240 C15orf56Q8N910 161 aa18.25■□□□□ 0.51
SMARCC1-203ENST00000454240 TMEM141Q96I45 108 aa18.25■□□□□ 0.51
SMARCC1-203ENST00000454240 CFAP161Q6P656 301 aa18.24■□□□□ 0.51
SMARCC1-203ENST00000454240 URB1-AS1Q96HZ7 61 aa18.23■□□□□ 0.51
SMARCC1-203ENST00000454240 IFITM10A6NMD0 228 aa18.22■□□□□ 0.51
SMARCC1-203ENST00000454240 COLCA2A8K830 154 aa18.22■□□□□ 0.51
SMARCC1-203ENST00000454240 APOBP04114 4563 aaKnown RBP18.21■□□□□ 0.51
SMARCC1-203ENST00000454240 CDK2AP2O75956 126 aa18.21■□□□□ 0.51
SMARCC1-203ENST00000454240 TIMM17AQ99595 171 aa18.21■□□□□ 0.51
SMARCC1-203ENST00000454240 AP5S1Q9NUS5 200 aa18.21■□□□□ 0.51
SMARCC1-203ENST00000454240 hDV102S1A0JD36 115 aa18.2■□□□□ 0.5
SMARCC1-203ENST00000454240 LINC01549A6NIU2 74 aa18.2■□□□□ 0.5
SMARCC1-203ENST00000454240 LINC00614P0C842 121 aa18.2■□□□□ 0.5
SMARCC1-203ENST00000454240 TEX43Q6ZNM6 134 aa18.2■□□□□ 0.5
SMARCC1-203ENST00000454240 AMELXQ99217 191 aa18.2■□□□□ 0.5
SMARCC1-203ENST00000454240 ERASQ7Z444 233 aa18.19■□□□□ 0.5
SMARCC1-203ENST00000454240 Q6ZN92 141 aa18.18■□□□□ 0.5
SMARCC1-203ENST00000454240 LINC00173Q6ZV60 143 aa18.18■□□□□ 0.5
SMARCC1-203ENST00000454240 VCX2Q9H322 139 aa18.18■□□□□ 0.5
SMARCC1-203ENST00000454240 SCO1O75880 301 aa18.17■□□□□ 0.5
SMARCC1-203ENST00000454240 TRGC2P03986 189 aa18.17■□□□□ 0.5
SMARCC1-203ENST00000454240 SCGB3A1Q96QR1 104 aa18.17■□□□□ 0.5
SMARCC1-203ENST00000454240 DNAH8Q96JB1 4490 aa18.17■□□□□ 0.5
SMARCC1-203ENST00000454240 GVQW2A0A096LPI5 108 aaPredicted RBP18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 IGHV1-58A0A0C4DH39 117 aa18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 COX7A2LO14548 114 aa18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 RAB5BP61020 215 aa18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 CNBPP62633 177 aaKnown RBP18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 LINC01620Q4KN68 170 aa18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 ZC2HC1BQ5TFG8 222 aa18.16■□□□□ 0.5
SMARCC1-203ENST00000454240 SLPIP03973 132 aa18.15■□□□□ 0.5
SMARCC1-203ENST00000454240 HIGD2BQ4VC39 106 aa18.15■□□□□ 0.5
SMARCC1-203ENST00000454240 PAPPA-AS1Q5QFB9 102 aa18.15■□□□□ 0.5
SMARCC1-203ENST00000454240 C2orf88Q9BSF0 95 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms