RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SOCS3O14543 225 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 LINC00308Q8TCZ7 52 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 ZNF462Q96JM2 2506 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 FBN2P35556 2912 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 IGHV3OR16-13A0A075B7E8 117 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 IGHV3-74A0A0B4J1X5 117 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 TRAV12-3A0A0B4J271 114 aa14.05□□□□□ -0.16
HMGA1-205ENST00000447654 MINOS1Q5TGZ0 78 aa14.04□□□□□ -0.16
HMGA1-205ENST00000447654 CLEC19AQ6UXS0 136 aa14.04□□□□□ -0.16
HMGA1-205ENST00000447654 MINOS1-NBL1R4GNA1 71 aa14.04□□□□□ -0.16
HMGA1-205ENST00000447654 KLLNB2CW77 178 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 SAA4P35542 130 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 Q8N9W7 124 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 LRRK2Q5S007 2527 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 GCN1Q92616 2671 aaKnown RBP14.03□□□□□ -0.16
HMGA1-205ENST00000447654 POLQO75417 2590 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 ZANQ9Y493 2812 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 J3QLI3 93 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 LINC01561Q8N1V8 128 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 DEFB104AQ8WTQ1 72 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 SERP1Q9Y6X1 66 aa14.03□□□□□ -0.16
HMGA1-205ENST00000447654 TRAV12-2A0A075B6T6 113 aa14.02□□□□□ -0.16
HMGA1-205ENST00000447654 OBSCN-AS1Q96MR7 158 aa14.02□□□□□ -0.16
HMGA1-205ENST00000447654 PF4P02776 101 aa14.02□□□□□ -0.17
HMGA1-205ENST00000447654 C9orf85Q96MD7 179 aa14.02□□□□□ -0.17
HMGA1-205ENST00000447654 FAM104AQ969W3 186 aa14.01□□□□□ -0.17
HMGA1-205ENST00000447654 PLA2G2AP14555 144 aa14□□□□□ -0.17
HMGA1-205ENST00000447654 UBE2D4Q9Y2X8 147 aa14□□□□□ -0.17
HMGA1-205ENST00000447654 IGHV3-49A0A0A0MS15 119 aa14□□□□□ -0.17
HMGA1-205ENST00000447654 PRB1P04280 392 aa14□□□□□ -0.17
HMGA1-205ENST00000447654 USP9YO00507 2555 aaPredicted RBP13.99□□□□□ -0.17
HMGA1-205ENST00000447654 ATP5EP2Q5VTU8 51 aa13.99□□□□□ -0.17
HMGA1-205ENST00000447654 FHL2Q14192 279 aa13.99□□□□□ -0.17
HMGA1-205ENST00000447654 S100A7L2Q5SY68 101 aa13.99□□□□□ -0.17
HMGA1-205ENST00000447654 C10orf105Q8TEF2 133 aa13.99□□□□□ -0.17
HMGA1-205ENST00000447654 IGHV4-61A0A0C4DH41 118 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 FAM236DA0A1B0GTK5 79 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 FAM236CP0DP71 79 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 Q8N2B8 174 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 ZNF843Q8N446 348 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 IGLV5-45A0A087WSX0 123 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 IGKV3D-7A0A0C4DH55 119 aa13.98□□□□□ -0.17
HMGA1-205ENST00000447654 IGHG2P01859 326 aa13.97□□□□□ -0.17
HMGA1-205ENST00000447654 FAM74A4Q5TZK3 123 aa13.97□□□□□ -0.17
HMGA1-205ENST00000447654 HIST2H2BCQ6DN03 193 aa13.97□□□□□ -0.17
HMGA1-205ENST00000447654 HIST2H2BDQ6DRA6 164 aa13.97□□□□□ -0.17
HMGA1-205ENST00000447654 BCE1O60756 84 aa13.96□□□□□ -0.17
HMGA1-205ENST00000447654 RPL28P46779 137 aaKnown RBP13.96□□□□□ -0.17
HMGA1-205ENST00000447654 ATP6V0E1O15342 81 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 LINC00336Q6ZUF6 198 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 FAM218AQ96MZ4 157 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 LINC00846Q9NV44 126 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.95□□□□□ -0.188e-8■■■□□ 18
HMGA1-205ENST00000447654 NACAE9PAV3 2078 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 IGHV3-16A0A0C4DH30 117 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 G3V318 75 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 J3QKU1 62 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 ECSCRQ19T08 205 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 TMEM243Q9BU79 118 aa13.95□□□□□ -0.18
HMGA1-205ENST00000447654 CSPG4Q6UVK1 2322 aa13.94□□□□□ -0.18
HMGA1-205ENST00000447654 UBR5O95071 2799 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-205ENST00000447654 BRD3OSQ6XYD6 125 aa13.94□□□□□ -0.18
HMGA1-205ENST00000447654 CCL19Q99731 98 aa13.94□□□□□ -0.18
HMGA1-205ENST00000447654 HELZ2Q9BYK8 2649 aaKnown RBP13.93□□□□□ -0.18
HMGA1-205ENST00000447654 TRAV13-2A0A0B4J235 113 aa13.93□□□□□ -0.18
HMGA1-205ENST00000447654 FAM223BA6NKX1 122 aa13.93□□□□□ -0.18
HMGA1-205ENST00000447654 NBPF19A0A087WUL8 3843 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 A0A087WVE0 104 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 RBMY1BA6NDE4 496 aaKnown RBP13.92□□□□□ -0.18
HMGA1-205ENST00000447654 RBMY1EA6NEQ0 496 aaKnown RBP13.92□□□□□ -0.18
HMGA1-205ENST00000447654 RBMY1DP0C7P1 496 aaKnown RBP13.92□□□□□ -0.18
HMGA1-205ENST00000447654 RBMY1A1P0DJD3 496 aaKnown RBP13.92□□□□□ -0.18
HMGA1-205ENST00000447654 RBMY1CP0DJD4 496 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 RBMY1FQ15415 496 aaKnown RBP13.92□□□□□ -0.18
HMGA1-205ENST00000447654 C1orf43Q9BWL3 253 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 IGHV4-30-2A0A087WSY4 118 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 IGLV5-39A0A0G2JS06 123 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 A8MZ25 164 aa13.92□□□□□ -0.18
HMGA1-205ENST00000447654 SETXQ7Z333 2677 aaKnown RBP13.91□□□□□ -0.18
HMGA1-205ENST00000447654 PTPN13Q12923 2485 aa13.91□□□□□ -0.18
HMGA1-205ENST00000447654 TRBV10-3A0A0K0K1G6 114 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 NDUFA4O00483 81 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 FAM223AQ8IWN6 122 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 ANKRD17O75179 2603 aaKnown RBP13.9□□□□□ -0.18
HMGA1-205ENST00000447654 ABCA12Q86UK0 2595 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 SMIM26A0A096LP01 95 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 GHRHP01286 108 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 TMEM86BQ8N661 226 aa13.9□□□□□ -0.18
HMGA1-205ENST00000447654 H0YGX0 51 aa13.89□□□□□ -0.19
HMGA1-205ENST00000447654 IGHV4-38-2P0DP08 117 aa13.89□□□□□ -0.19
HMGA1-205ENST00000447654 C5orf56Q8N8D9 126 aa13.89□□□□□ -0.19
HMGA1-205ENST00000447654 PIMREGQ9BSJ6 248 aa13.89□□□□□ -0.19
HMGA1-205ENST00000447654 SOSTDC1Q6X4U4 206 aa13.88□□□□□ -0.19
HMGA1-205ENST00000447654 Q9H8V8 135 aa13.88□□□□□ -0.19
HMGA1-205ENST00000447654 C14orf132Q9NPU4 83 aa13.88□□□□□ -0.19
HMGA1-205ENST00000447654 ZNF469Q96JG9 3925 aaPredicted RBP13.88□□□□□ -0.19
HMGA1-205ENST00000447654 F6UB75 175 aa13.88□□□□□ -0.19
HMGA1-205ENST00000447654 XCL1P47992 114 aa13.87□□□□□ -0.19
HMGA1-205ENST00000447654 XCL2Q9UBD3 114 aa13.87□□□□□ -0.19
HMGA1-205ENST00000447654 MXRA5Q9NR99 2828 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms