RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 FAM213BQ8TBF2 198 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 MBD3L1Q8WWY6 194 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 NIT2Q9NQR4 276 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 MED9Q9NWA0 146 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 IGLV4-69A0A075B6H9 119 aa4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 IGKV2-29A2NJV5 120 aaPredicted RBP4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 EIF4EBP3O60516 100 aaPredicted RBP4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 APOMO95445 188 aa4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 MEF2BQ02080 365 aaPredicted RBP4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 BAGE2Q86Y30 109 aa4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 NUP35Q8NFH5 326 aa4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 OR5A1Q8NGJ0 315 aa4.59□□□□□ -1.67
LIMCH1-204ENST00000446625 LINC00959A0A1B0GUT2 108 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 TEX46H3BTG2 121 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 NTF3P20783 257 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 CCL20P78556 96 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 RPL18AQ02543 176 aaKnown RBP4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 COMMD7Q86VX2 200 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 SFT2D1Q8WV19 159 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 ISOC2Q96AB3 205 aa4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 CARHSP1Q9Y2V2 147 aaKnown RBP4.58□□□□□ -1.68
LIMCH1-204ENST00000446625 TMEM238LA0A1B0GVL6 79 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 FAM168BA1KXE4 195 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 RAB19A4D1S5 217 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 CD164L2Q6UWJ8 174 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 CAMK2N2Q96S95 79 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 OPRPNQ99935 248 aaPredicted RBP4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 MLST8Q9BVC4 326 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 CDIP1Q9H305 208 aa4.57□□□□□ -1.68
LIMCH1-204ENST00000446625 H7C423 109 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 ATP6V1G1O75348 118 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 IGLC6P0CF74 106 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 RPL35P42766 123 aaKnown RBP4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 LINC01547P58512 204 aaPredicted RBP4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 SRSF3P84103 164 aaKnown RBP4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 CENPWQ5EE01 88 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 FAM210AQ96ND0 272 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 RETNLBQ9BQ08 111 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 TCEAL7Q9BRU2 100 aa4.56□□□□□ -1.68
LIMCH1-204ENST00000446625 APCSP02743 223 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 SS18Q15532 418 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 UQCC3Q6UW78 93 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 OR2D3Q8NGH3 330 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 TSKUQ8WUA8 353 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 C2orf48Q96LS8 159 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 RPP21Q9H633 154 aaKnown RBP4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 GNG13Q9P2W3 67 aa4.55□□□□□ -1.68
LIMCH1-204ENST00000446625 C9JQL5 133 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 NCR2O95944 276 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 S100A9P06702 114 aaKnown RBP4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 ZNF25P17030 456 aaPredicted RBP4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 MALP21145 153 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 TPRXLQ17RH7 258 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 FAM19A5Q7Z5A7 132 aaPredicted RBP4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 KRTAP7-1Q8IUC3 87 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 GATD1Q8NB37 220 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 TMEM101Q96IK0 257 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 BTF3L4Q96K17 158 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 MANBALQ9NQG1 85 aa4.54□□□□□ -1.68
LIMCH1-204ENST00000446625 A0A087X002 238 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 COX7A2LO14548 114 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 IFNA1P01562 189 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 SRP19P09132 144 aaKnown RBP4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 TRGC1P0CF51 173 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 UBE2BP63146 152 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 RPL39LQ96EH5 51 aaKnown RBP4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 EIF5A2Q9GZV4 153 aaKnown RBP4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 SMDT1Q9H4I9 107 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 CDC42SE2Q9NRR3 84 aa4.53□□□□□ -1.68
LIMCH1-204ENST00000446625 IGLV7-46A0A075B6I9 117 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 TMEM218A2RU14 115 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 C19orf71A6NCJ1 209 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 ESDP10768 282 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 ADCYAP1P18509 176 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 S100A1P23297 94 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 TAGLN2P37802 199 aaKnown RBP4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 PEA15Q15121 130 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 RNF151Q2KHN1 245 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 C10orf91Q5T1B1 145 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 LYZL1Q6UWQ5 148 aa4.52□□□□□ -1.69
LIMCH1-204ENST00000446625 SDHAF1A6NFY7 115 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 F2Z2F3 143 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 M0QXV9 152 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 ZNF861PO60384 105 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 GNG4P50150 75 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 FOXA3P55318 350 aaPredicted RBP4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 RPS20P60866 119 aaKnown RBP4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 SPAG11BQ08648 103 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 TWIST1Q15672 202 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 C5orf38Q86SI9 138 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 TYMSOSQ8TAI1 123 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 C11orf52Q96A22 123 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 IMMP2LQ96T52 175 aa4.51□□□□□ -1.69
LIMCH1-204ENST00000446625 TRBV20OR9-2A0A075B6H5 130 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 C1orf196B1AJZ1 125 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 TMEM250H0YL14 139 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 I3L3M4 83 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 CRYGAP11844 174 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms