RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 E9PLD3 99 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 ODF3Q96PU9 254 aa9.08□□□□□ -0.96
CCDC88A-207ENST00000436346 ANKRD39Q53RE8 183 aa9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 UBE2D3P61077 147 aa9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 H7C423 109 aa9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 MSMPQ1L6U9 139 aa9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 UTRNP46939 3433 aa9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 CDPF1Q6NVV7 123 aa9.07□□□□□ -0.96
CCDC88A-207ENST00000436346 TDRG1Q3Y452 100 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 MIFP14174 115 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 SPANXCQ9NY87 97 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 WFDC10BQ8IUB3 73 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 KIR2DL5BA0A0G2JN68 375 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 KIR2DL5BA0A0G2JPC4 375 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 PDE6GP18545 87 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 CFAP126Q5VTH2 177 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 KIR2DL5AQ8N109 375 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 FLNAP21333 2647 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 PLA2G2AP14555 144 aa9.06□□□□□ -0.96
CCDC88A-207ENST00000436346 HRCT1Q6UXD1 115 aa9.05□□□□□ -0.96
CCDC88A-207ENST00000436346 SMIM20Q8N5G0 67 aa9.05□□□□□ -0.96
CCDC88A-207ENST00000436346 SS18L2Q9UHA2 77 aa9.04□□□□□ -0.96
CCDC88A-207ENST00000436346 HIGD1BQ9P298 99 aa9.04□□□□□ -0.96
CCDC88A-207ENST00000436346 TRAV10A0A0B4J240 114 aa9.04□□□□□ -0.96
CCDC88A-207ENST00000436346 GDF5OSQ5U4N7 250 aa9.04□□□□□ -0.96
CCDC88A-207ENST00000436346 C20orf203Q8NBC4 194 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 IGKV2-28A0A075B6P5 120 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 USP17L23D6RBM5 183 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 IGKV2D-28P01615 120 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 DCANP1Q8TF63 244 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 SPRY4Q9C004 299 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 BPY2O14599 106 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 B5MCH6 92 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 NEXN-AS1Q8NBZ9 246 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 SVIPQ8NHG7 77 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 IGF1P05019 195 aa9.03□□□□□ -0.96
CCDC88A-207ENST00000436346 C10orf99Q6UWK7 81 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 TRAV23DV6A0A075B6W5 121 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 A0A0J9YWU9 116 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 Q6ZSV7 163 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 TTTY13Q9BZ97 58 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 NUPR1O60356 82 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 WFDC10AQ9H1F0 79 aa9.02□□□□□ -0.97
CCDC88A-207ENST00000436346 CR1P17927 2039 aa9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 KPRPQ5T749 579 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 MGAM2Q2M2H8 2515 aa9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 TEX49A0A1B0GTD5 131 aa9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 C5orf42Q9H799 3197 aa9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 ZNF80P51504 273 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 LINC00574Q9H8X3 128 aa9.01□□□□□ -0.97
CCDC88A-207ENST00000436346 SPANXB1Q9NS25 103 aaPredicted RBP9□□□□□ -0.97
CCDC88A-207ENST00000436346 Q6ZSR3 168 aa9□□□□□ -0.97
CCDC88A-207ENST00000436346 TRBV6-8A0A0A6YYG3 113 aa9□□□□□ -0.97
CCDC88A-207ENST00000436346 C19orf71A6NCJ1 209 aa9□□□□□ -0.97
CCDC88A-207ENST00000436346 NANOS2P60321 138 aaKnown RBP9□□□□□ -0.97
CCDC88A-207ENST00000436346 TCL1BO95988 128 aa9□□□□□ -0.97
CCDC88A-207ENST00000436346 K7EQG2 157 aa9□□□□□ -0.97
CCDC88A-207ENST00000436346 NDUFC2O95298 119 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 XAGE1AQ9HD64 81 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 A0A0J9YXY3 114 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 WFDC2Q14508 124 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 C22orf34Q6ZV56 151 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 ZNF706Q9Y5V0 76 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 C3orf84H3BNL1 204 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 SPINK6Q6UWN8 80 aa8.99□□□□□ -0.97
CCDC88A-207ENST00000436346 J3KT08 172 aa8.98□□□□□ -0.97
CCDC88A-207ENST00000436346 C18orf65Q6ZTR6 163 aa8.98□□□□□ -0.97
CCDC88A-207ENST00000436346 CLUHP3Q96NS8 147 aa8.98□□□□□ -0.97
CCDC88A-207ENST00000436346 HELZ2Q9BYK8 2649 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-207ENST00000436346 SDIM1Q6ZPB5 146 aa8.97□□□□□ -0.97
CCDC88A-207ENST00000436346 C1orf158Q8N1D5 194 aa8.97□□□□□ -0.97
CCDC88A-207ENST00000436346 IGLV9-49A0A0B4J1Y8 123 aa8.97□□□□□ -0.97
CCDC88A-207ENST00000436346 BBC3Q96PG8 261 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-207ENST00000436346 H3BT86 120 aa8.96□□□□□ -0.97
CCDC88A-207ENST00000436346 C11orf71Q6IPW1 123 aa8.96□□□□□ -0.97
CCDC88A-207ENST00000436346 ZNF702PQ9H963 129 aa8.96□□□□□ -0.97
CCDC88A-207ENST00000436346 CDKN2A-AS1Q9UH64 79 aa8.96□□□□□ -0.97
CCDC88A-207ENST00000436346 SLPIP03973 132 aa8.96□□□□□ -0.98
CCDC88A-207ENST00000436346 M0QY20 66 aa8.96□□□□□ -0.98
CCDC88A-207ENST00000436346 RPL37AP8A6NKH3 93 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 PIK3CD-AS1Q5SR53 167 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 C3orf22Q8N5N4 141 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 CEP350Q5VT06 3117 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 FRMD6-AS1P0C7T7 363 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 SCXQ7RTU7 201 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 PPDPFQ9H3Y8 114 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 PLA2G2EQ9NZK7 142 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 SYCNQ0VAF6 134 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 LINC00474Q9P2X8 69 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 P0C879 139 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 COA6Q5JTJ3 125 aaKnown RBP8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 SMR3AQ99954 134 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 ZFAND3Q9H8U3 227 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 IBA57-AS1B1ANH7 110 aa8.95□□□□□ -0.98
CCDC88A-207ENST00000436346 COL4A2P08572 1712 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 LY6LH3BQJ8 138 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 PROK1P58294 105 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 LINC00526Q96FQ7 95 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 PSMG3-AS1Q96PY0 264 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms