RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 C12orf57Q99622 126 aa7.8□□□□□ -1.16
LINC00539-203ENST00000434601 FRAS1Q86XX4 4008 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 IGLV4-3A0A075B6K6 122 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 TRAV12-1A0A0B4J245 112 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 H7C423 109 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 CDPF1Q6NVV7 123 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 LINC00518Q8N0U6 118 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 TIMM21Q9BVV7 248 aa7.79□□□□□ -1.16
LINC00539-203ENST00000434601 A0A087WX48 190 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 FGF6P10767 208 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 GAGE6Q13070 117 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 ODF1Q14990 250 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 PAPPA-AS1Q5QFB9 102 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 Q6ZUT4 128 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 MRPL52Q86TS9 123 aaKnown RBP7.78□□□□□ -1.16
LINC00539-203ENST00000434601 CHCHD5Q9BSY4 110 aa7.78□□□□□ -1.16
LINC00539-203ENST00000434601 ZNF25P17030 456 aaPredicted RBP7.77□□□□□ -1.17
LINC00539-203ENST00000434601 MRPS36P82909 103 aaKnown RBP7.77□□□□□ -1.17
LINC00539-203ENST00000434601 PMVKQ15126 192 aa7.77□□□□□ -1.17
LINC00539-203ENST00000434601 AMMECR1LQ6DCA0 310 aa7.77□□□□□ -1.17
LINC00539-203ENST00000434601 TEX43Q6ZNM6 134 aa7.77□□□□□ -1.17
LINC00539-203ENST00000434601 C15orf53Q8NAA6 179 aa7.77□□□□□ -1.17
LINC00539-203ENST00000434601 OPRPNQ99935 248 aaPredicted RBP7.77□□□□□ -1.17
LINC00539-203ENST00000434601 PMCHL2Q9BQD1 86 aa7.77□□□□□ -1.17
LINC00539-203ENST00000434601 CSDC2Q9Y534 153 aaKnown RBP7.77□□□□□ -1.17
LINC00539-203ENST00000434601 KMT2AQ03164 3969 aa7.77□□□□□ -1.17
LINC00539-203ENST00000434601 F8VRH5 84 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 TCTAP57738 103 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 TIRAPP58753 221 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 LELP1Q5T871 98 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 ZC2HC1BQ5TFG8 222 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 DGAT2L7PQ6IED9 249 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 ATOH7Q8N100 152 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 OR5A1Q8NGJ0 315 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 TMEM101Q96IK0 257 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 CST9LQ9H4G1 147 aa7.76□□□□□ -1.17
LINC00539-203ENST00000434601 PRSS29PA6NIE9 313 aa7.75□□□□□ -1.17
LINC00539-203ENST00000434601 FAM104AQ969W3 186 aa7.75□□□□□ -1.17
LINC00539-203ENST00000434601 AMELXQ99217 191 aa7.75□□□□□ -1.17
LINC00539-203ENST00000434601 C2orf88Q9BSF0 95 aa7.75□□□□□ -1.17
LINC00539-203ENST00000434601 VCX2Q9H322 139 aa7.75□□□□□ -1.17
LINC00539-203ENST00000434601 MRPL35Q9NZE8 188 aaKnown RBP7.75□□□□□ -1.17
LINC00539-203ENST00000434601 CHTOPQ9Y3Y2 248 aaKnown RBP7.75□□□□□ -1.17
LINC00539-203ENST00000434601 DPM2O94777 84 aa7.74□□□□□ -1.17
LINC00539-203ENST00000434601 IGKCP01834 107 aa7.74□□□□□ -1.17
LINC00539-203ENST00000434601 PKIAP61925 76 aa7.74□□□□□ -1.17
LINC00539-203ENST00000434601 S100A12P80511 92 aa7.74□□□□□ -1.17
LINC00539-203ENST00000434601 RNASE13Q5GAN3 156 aaKnown RBP7.74□□□□□ -1.17
LINC00539-203ENST00000434601 LYPD5Q6UWN5 251 aa7.74□□□□□ -1.17
LINC00539-203ENST00000434601 VAMP8Q9BV40 100 aa7.74□□□□□ -1.17
LINC00539-203ENST00000434601 PLNP26678 52 aa7.73□□□□□ -1.17
LINC00539-203ENST00000434601 ZNF664Q8N3J9 261 aa7.73□□□□□ -1.17
LINC00539-203ENST00000434601 CDC42SE2Q9NRR3 84 aa7.73□□□□□ -1.17
LINC00539-203ENST00000434601 IGLV4-69A0A075B6H9 119 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 TRAV9-2A0A087WT02 112 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 TRAV8-6A0A0B4J262 113 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 A0A1B0GUV1 79 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 IGLL5B9A064 214 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 TMEM262E9PQX1 116 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 RBX1P62877 108 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 MPV17L2Q567V2 206 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 KRTAP17-1Q9BYP8 105 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 PAM16Q9Y3D7 125 aa7.72□□□□□ -1.17
LINC00539-203ENST00000434601 IGLV4-60A0A075B6I1 120 aa7.71□□□□□ -1.18
LINC00539-203ENST00000434601 hDV102S1A0JD36 115 aa7.71□□□□□ -1.18
LINC00539-203ENST00000434601 HSBP1L1C9JCN9 74 aa7.71□□□□□ -1.18
LINC00539-203ENST00000434601 IGLC3P0DOY3 106 aa7.71□□□□□ -1.18
LINC00539-203ENST00000434601 ESRGQ1W209 222 aa7.71□□□□□ -1.18
LINC00539-203ENST00000434601 CHAC1Q9BUX1 264 aa7.71□□□□□ -1.18
LINC00539-203ENST00000434601 C11orf86A6NJI1 115 aa7.7□□□□□ -1.18
LINC00539-203ENST00000434601 UBE2D1P51668 147 aa7.7□□□□□ -1.18
LINC00539-203ENST00000434601 MAJINQ3KP22 176 aa7.7□□□□□ -1.18
LINC00539-203ENST00000434601 SPATA45Q537H7 98 aa7.7□□□□□ -1.18
LINC00539-203ENST00000434601 NFE4Q86UQ8 179 aa7.7□□□□□ -1.18
LINC00539-203ENST00000434601 A0A0J9YXV3 536 aa7.69□□□□□ -1.18
LINC00539-203ENST00000434601 WFDC10BQ8IUB3 73 aa7.69□□□□□ -1.18
LINC00539-203ENST00000434601 Q8N3U1 123 aa7.69□□□□□ -1.18
LINC00539-203ENST00000434601 TRAV13-1A0A0B4J241 112 aa7.68□□□□□ -1.18
LINC00539-203ENST00000434601 TINCRA0A1B0GVN0 87 aa7.68□□□□□ -1.18
LINC00539-203ENST00000434601 MRPS16Q9Y3D3 137 aaKnown RBP7.68□□□□□ -1.18
LINC00539-203ENST00000434601 ANGP03950 147 aaKnown RBP7.67□□□□□ -1.18
LINC00539-203ENST00000434601 ZNF22P17026 224 aaPredicted RBP7.67□□□□□ -1.18
LINC00539-203ENST00000434601 CCL18P55774 89 aa7.67□□□□□ -1.18
LINC00539-203ENST00000434601 SEC11AP67812 179 aa7.67□□□□□ -1.18
LINC00539-203ENST00000434601 ANKRD39Q53RE8 183 aa7.67□□□□□ -1.18
LINC00539-203ENST00000434601 TMEM170BQ5T4T1 132 aa7.67□□□□□ -1.18
LINC00539-203ENST00000434601 FAM19A3Q7Z5A8 133 aa7.67□□□□□ -1.18
LINC00539-203ENST00000434601 STPG4Q8N801 248 aa7.67□□□□□ -1.18
LINC00539-203ENST00000434601 GEMIN7Q9H840 131 aaKnown RBP7.67□□□□□ -1.18
LINC00539-203ENST00000434601 IGKV3OR2-268A0A0C4DH90 116 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 HERVK_113P61574 105 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 HERVK_113P63121 156 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 CLPSL2Q6UWE3 100 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 LINC00336Q6ZUF6 198 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 APLNQ9ULZ1 77 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 LINC00588Q9Y4M8 146 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 HECTD4Q9Y4D8 3996 aa7.66□□□□□ -1.18
LINC00539-203ENST00000434601 IGLV5-45A0A087WSX0 123 aa7.65□□□□□ -1.18
LINC00539-203ENST00000434601 TSTD3H0UI37 97 aa7.65□□□□□ -1.18
LINC00539-203ENST00000434601 IGHV3-30P01768 117 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms