RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 IZUMO2Q6UXV1 221 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 FOXI2Q6ZQN5 318 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 Q6ZRN7 208 aaPredicted RBP1.57□□□□□ -2.16
USP40-204ENST00000427947 FAM19A2Q8N3H0 131 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 C15orf53Q8NAA6 179 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 OR10AC1Q8NH08 325 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 CIB3Q96Q77 187 aaPredicted RBP1.57□□□□□ -2.16
USP40-204ENST00000427947 ORMDL1Q9P0S3 153 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 MYH6P13533 1939 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 ALPK3Q96L96 1907 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 LRRC37AA6NMS7 1700 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 LAMA4Q16363 1823 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 FOCADQ5VW36 1801 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 CDK5RAP2Q96SN8 1893 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 ACACAQ13085 2346 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 CCDC88CQ9P219 2028 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 LINC00587B1AMM8 73 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 H3BRM9 83 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 DLEU1O43261 78 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 NCR2O95944 276 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 CCL4P13236 92 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 DEFB103AP81534 67 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 ZCCHC23Q6ZST2 131 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 SNX29P2Q8IUI4 249 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 LINC00269Q8N2A0 174 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 C5orf17Q8NAS9 161 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 PSMF1Q92530 271 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 PSMG3Q9BT73 122 aaPredicted RBP1.56□□□□□ -2.16
USP40-204ENST00000427947 LSM2Q9Y333 95 aaKnown RBP1.56□□□□□ -2.16
USP40-204ENST00000427947 MPC1Q9Y5U8 109 aa1.56□□□□□ -2.16
USP40-204ENST00000427947 PLECQ15149 4684 aaKnown RBP1.56□□□□□ -2.16
USP40-204ENST00000427947 A0A0G2JMM0 328 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 A0A1W2PPB8 328 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 FAM92AA1XBS5 289 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 KIR3DP1A8MWS1 328 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 CDC42EP2O14613 210 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 CCL16O15467 120 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 YPEL1O60688 119 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 CNBPP62633 177 aaKnown RBP1.55□□□□□ -2.16
USP40-204ENST00000427947 EMX2Q04743 252 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 C3orf62Q6ZUJ4 267 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 LINC00052Q96N35 136 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 NOP16Q9Y3C1 178 aaKnown RBP1.55□□□□□ -2.16
USP40-204ENST00000427947 SOX21Q9Y651 276 aaPredicted RBP1.55□□□□□ -2.16
USP40-204ENST00000427947 MYH8P13535 1937 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 MED13Q9UHV7 2174 aa1.55□□□□□ -2.16
USP40-204ENST00000427947 ANAPC1Q9H1A4 1944 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 MPDZO75970 2070 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 IFITM5A6NNB3 132 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 RNASE3P12724 160 aaKnown RBP1.54□□□□□ -2.16
USP40-204ENST00000427947 COX7CP15954 63 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 PLGLB1Q02325 96 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 Q8N2B8 174 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 OR10AG1Q8NH19 301 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 PATE1Q8WXA2 126 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 TMEM191AQ9H0A3 160 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 SNURFQ9Y675 71 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 LAMB1P07942 1786 aa1.54□□□□□ -2.16
USP40-204ENST00000427947 TRBV20-1A0A075B6N2 111 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 TRAV17A0A0B4J275 112 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 APOC1P02654 83 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 PYYP10082 97 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 MYH1P12882 1939 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 SPCS2Q15005 226 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 PCOTHQ58A44 107 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.53□□□□□ -2.16
USP40-204ENST00000427947 ATOH7Q8N100 152 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 KCNRGQ8N5I3 272 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 ALMS1Q8TCU4 4167 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 C2orf88Q9BSF0 95 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 PDCD10Q9BUL8 212 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 SAR1AQ9NR31 198 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 GNG8Q9UK08 70 aa1.53□□□□□ -2.16
USP40-204ENST00000427947 BAZ2BQ9UIF8 2168 aaKnown RBP1.52□□□□□ -2.17
USP40-204ENST00000427947 DDX60LQ5H9U9 1706 aaKnown RBP1.52□□□□□ -2.17
USP40-204ENST00000427947 STARD9Q9P2P6 4700 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 FAT1Q14517 4588 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 ANK3Q12955 4377 aaKnown RBP1.52□□□□□ -2.17
USP40-204ENST00000427947 TRBV6-4A0A1B0GX49 114 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 IL7P13232 177 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 ADCYAP1P18509 176 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 ASIPP42127 132 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 IQCJQ1A5X6 159 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 ASB16-AS1Q495Z4 193 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 MIC13Q5XKP0 118 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 IDO2Q6ZQW0 420 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 CCDC167Q9P0B6 97 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 MYH4Q9Y623 1939 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 LYSTQ99698 3801 aa1.52□□□□□ -2.17
USP40-204ENST00000427947 NUMA1Q14980 2115 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 A6NN06 94 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 J3QLW9 94 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 GEMIN2O14893 280 aaKnown RBP1.51□□□□□ -2.17
USP40-204ENST00000427947 KLF7O75840 302 aaPredicted RBP1.51□□□□□ -2.17
USP40-204ENST00000427947 PPYP01298 95 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 IGF2P01344 180 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 ZNF25P17030 456 aaPredicted RBP1.51□□□□□ -2.17
USP40-204ENST00000427947 WHAMMP3Q1A5X7 153 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 MPV17LQ2QL34 196 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms