RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 A0A0B4J2C4 111 aa12.76□□□□□ -0.37
PHRF1-202ENST00000413872 TRBV10-2A0A0K0K1G8 114 aa12.76□□□□□ -0.37
PHRF1-202ENST00000413872 LELP1Q5T871 98 aa12.75□□□□□ -0.37
PHRF1-202ENST00000413872 RNASE3P12724 160 aaKnown RBP12.75□□□□□ -0.37
PHRF1-202ENST00000413872 HIST2H2BDQ6DRA6 164 aa12.75□□□□□ -0.37
PHRF1-202ENST00000413872 ZNF22P17026 224 aaPredicted RBP12.75□□□□□ -0.37
PHRF1-202ENST00000413872 C9orf85Q96MD7 179 aa12.75□□□□□ -0.37
PHRF1-202ENST00000413872 KPRPQ5T749 579 aaPredicted RBP12.75□□□□□ -0.37
PHRF1-202ENST00000413872 RNF185Q96GF1 192 aa12.74□□□□□ -0.37
PHRF1-202ENST00000413872 C16orf95Q9H693 158 aa12.74□□□□□ -0.37
PHRF1-202ENST00000413872 DSCAML1Q8TD84 2053 aa12.74□□□□□ -0.37
PHRF1-202ENST00000413872 SYCNQ0VAF6 134 aa12.74□□□□□ -0.37
PHRF1-202ENST00000413872 RBX1P62877 108 aa12.73□□□□□ -0.37
PHRF1-202ENST00000413872 A0A1W2PPR1 153 aa12.73□□□□□ -0.37
PHRF1-202ENST00000413872 TMEM223A0PJW6 202 aa12.73□□□□□ -0.37
PHRF1-202ENST00000413872 WFDC10AQ9H1F0 79 aa12.71□□□□□ -0.37
PHRF1-202ENST00000413872 WDR87Q6ZQQ6 2873 aa12.71□□□□□ -0.37
PHRF1-202ENST00000413872 CD164L2Q6UWJ8 174 aa12.71□□□□□ -0.38
PHRF1-202ENST00000413872 IGHV4-30-4P0DP06 118 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 IGLV1-51P01701 117 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 MP68P56378 58 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 HIGD2AQ9BW72 106 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 EP400Q96L91 3159 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 SMR3AQ99954 134 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 HCFC1P51610 2035 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 Q8N976 141 aa12.7□□□□□ -0.38
PHRF1-202ENST00000413872 PRR9Q5T870 116 aa12.69□□□□□ -0.38
PHRF1-202ENST00000413872 CLEC2BQ92478 149 aa12.69□□□□□ -0.38
PHRF1-202ENST00000413872 PROK1P58294 105 aa12.69□□□□□ -0.38
PHRF1-202ENST00000413872 OXLD1Q5BKU9 147 aa12.68□□□□□ -0.38
PHRF1-202ENST00000413872 TNRC6BQ9UPQ9 1833 aaKnown RBP12.68□□□□□ -0.38
PHRF1-202ENST00000413872 A0A1B0GX51 115 aa12.68□□□□□ -0.38
PHRF1-202ENST00000413872 MRPS36P82909 103 aaKnown RBP12.68□□□□□ -0.38
PHRF1-202ENST00000413872 ODF3L2Q3SX64 289 aa12.68□□□□□ -0.38
PHRF1-202ENST00000413872 SPANXB1Q9NS25 103 aaPredicted RBP12.68□□□□□ -0.38
PHRF1-202ENST00000413872 TAX1BP3O14907 124 aa12.68□□□□□ -0.38
PHRF1-202ENST00000413872 TSHBP01222 138 aa12.67□□□□□ -0.38
PHRF1-202ENST00000413872 C11orf21Q9P2W6 132 aa12.67□□□□□ -0.38
PHRF1-202ENST00000413872 A0A087WZ39 114 aa12.67□□□□□ -0.38
PHRF1-202ENST00000413872 C7orf33Q8WU49 177 aa12.67□□□□□ -0.38
PHRF1-202ENST00000413872 NRACQ8N912 160 aa12.66□□□□□ -0.38
PHRF1-202ENST00000413872 CNFNQ9BYD5 112 aa12.66□□□□□ -0.38
PHRF1-202ENST00000413872 POLR2KP53803 58 aaKnown RBP12.66□□□□□ -0.38
PHRF1-202ENST00000413872 FAM19A1Q7Z5A9 133 aa12.66□□□□□ -0.38
PHRF1-202ENST00000413872 ARHGAP32A7KAX9 2087 aa12.65□□□□□ -0.38
PHRF1-202ENST00000413872 LINC00308Q8TCZ7 52 aa12.65□□□□□ -0.38
PHRF1-202ENST00000413872 TIMM17BO60830 172 aa12.64□□□□□ -0.39
PHRF1-202ENST00000413872 MUC7Q8TAX7 377 aa12.64□□□□□ -0.39
PHRF1-202ENST00000413872 WFDC2Q14508 124 aa12.64□□□□□ -0.39
PHRF1-202ENST00000413872 CHCHD7Q9BUK0 85 aa12.64□□□□□ -0.39
PHRF1-202ENST00000413872 CEP295Q9C0D2 2601 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 MRPS12O15235 138 aaKnown RBP12.63□□□□□ -0.39
PHRF1-202ENST00000413872 IGLV4-69A0A075B6H9 119 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 UBE2D3P61077 147 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 UBE2D2P62837 147 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 ATG2AQ2TAZ0 1938 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 ANKRD11Q6UB99 2663 aaPredicted RBP12.63□□□□□ -0.39
PHRF1-202ENST00000413872 ATOX1O00244 68 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 SMIM20Q8N5G0 67 aa12.63□□□□□ -0.39
PHRF1-202ENST00000413872 JMJD1CQ15652 2540 aa12.62□□□□□ -0.39
PHRF1-202ENST00000413872 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.62□□□□□ -0.39
PHRF1-202ENST00000413872 LINC00959A0A1B0GUT2 108 aa12.62□□□□□ -0.39
PHRF1-202ENST00000413872 DOPEY1Q5JWR5 2465 aa12.62□□□□□ -0.39
PHRF1-202ENST00000413872 A0A0J9YWU9 116 aa12.62□□□□□ -0.39
PHRF1-202ENST00000413872 UBE2D4Q9Y2X8 147 aa12.62□□□□□ -0.39
PHRF1-202ENST00000413872 CLUHP3Q96NS8 147 aa12.61□□□□□ -0.39
PHRF1-202ENST00000413872 NUPR2A6NF83 97 aa12.61□□□□□ -0.39
PHRF1-202ENST00000413872 IGKV3D-7A0A0C4DH55 119 aa12.61□□□□□ -0.39
PHRF1-202ENST00000413872 FOXI1Q12951 378 aa12.61□□□□□ -0.39
PHRF1-202ENST00000413872 XAGE1AQ9HD64 81 aa12.6□□□□□ -0.39
PHRF1-202ENST00000413872 ZFYVE26Q68DK2 2539 aa12.6□□□□□ -0.39
PHRF1-202ENST00000413872 FAM19A5Q7Z5A7 132 aaPredicted RBP12.59□□□□□ -0.39
PHRF1-202ENST00000413872 TANC2Q9HCD6 1990 aa12.59□□□□□ -0.39
PHRF1-202ENST00000413872 LOC100131303A0A0U1RQF7 123 aa12.59□□□□□ -0.39
PHRF1-202ENST00000413872 IGLV2-18A0A075B6J9 118 aa12.59□□□□□ -0.39
PHRF1-202ENST00000413872 NANOS2P60321 138 aaKnown RBP12.59□□□□□ -0.39
PHRF1-202ENST00000413872 ABCA12Q86UK0 2595 aa12.58□□□□□ -0.4
PHRF1-202ENST00000413872 H0Y9J4 135 aa12.58□□□□□ -0.4
PHRF1-202ENST00000413872 TMEM258P61165 79 aa12.58□□□□□ -0.4
PHRF1-202ENST00000413872 LOC107984640A0A0U1RRK4 108 aa12.58□□□□□ -0.4
PHRF1-202ENST00000413872 YPEL4Q96NS1 127 aa12.57□□□□□ -0.4
PHRF1-202ENST00000413872 LINC00474Q9P2X8 69 aa12.57□□□□□ -0.4
PHRF1-202ENST00000413872 RNASE8Q8TDE3 154 aaKnown RBP12.57□□□□□ -0.4
PHRF1-202ENST00000413872 TCL1BO95988 128 aa12.56□□□□□ -0.4
PHRF1-202ENST00000413872 USP9XQ93008 2570 aaPredicted RBP12.56□□□□□ -0.4
PHRF1-202ENST00000413872 M0R378 163 aa12.56□□□□□ -0.4
PHRF1-202ENST00000413872 COX17Q14061 63 aa12.56□□□□□ -0.4
PHRF1-202ENST00000413872 IGKV2D-26A0A0A0MRZ7 120 aa12.56□□□□□ -0.4
PHRF1-202ENST00000413872 LY6G6CO95867 125 aa12.56□□□□□ -0.4
PHRF1-202ENST00000413872 ZNF706Q9Y5V0 76 aaPredicted RBP12.56□□□□□ -0.4
PHRF1-202ENST00000413872 CHKB-CPT1BH3BT56 60 aa12.55□□□□□ -0.4
PHRF1-202ENST00000413872 BPY2O14599 106 aa12.55□□□□□ -0.4
PHRF1-202ENST00000413872 UBE2D1P51668 147 aa12.55□□□□□ -0.4
PHRF1-202ENST00000413872 TRAV23DV6A0A075B6W5 121 aa12.55□□□□□ -0.4
PHRF1-202ENST00000413872 C14orf132Q9NPU4 83 aa12.55□□□□□ -0.4
PHRF1-202ENST00000413872 TP73-AS1Q9UF72 201 aa12.55□□□□□ -0.4
PHRF1-202ENST00000413872 PRB2P02812 416 aaPredicted RBP12.54□□□□□ -0.4
PHRF1-202ENST00000413872 CDC42SE2Q9NRR3 84 aa12.54□□□□□ -0.4
PHRF1-202ENST00000413872 Q8IZM0 81 aa12.54□□□□□ -0.4
PHRF1-202ENST00000413872 CPAMD8Q8IZJ3 1885 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms