RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 SPANXA1Q9NS26 97 aa8.65□□□□□ -1.02
CHMP3-204ENST00000409727 TRAV9-2A0A087WT02 112 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 TRAV12-1A0A0B4J245 112 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 FAM104AQ969W3 186 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 PYGO1Q9Y3Y4 419 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 F8VRH5 84 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 IGKCP01834 107 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 STPG4Q8N801 248 aa8.64□□□□□ -1.03
CHMP3-204ENST00000409727 HSBP1L1C9JCN9 74 aa8.63□□□□□ -1.03
CHMP3-204ENST00000409727 DPM2O94777 84 aa8.63□□□□□ -1.03
CHMP3-204ENST00000409727 TMEM97Q5BJF2 176 aa8.63□□□□□ -1.03
CHMP3-204ENST00000409727 TMEM262E9PQX1 116 aa8.62□□□□□ -1.03
CHMP3-204ENST00000409727 OR5A1Q8NGJ0 315 aa8.62□□□□□ -1.03
CHMP3-204ENST00000409727 PLNP26678 52 aa8.62□□□□□ -1.03
CHMP3-204ENST00000409727 PAPPA-AS1Q5QFB9 102 aa8.62□□□□□ -1.03
CHMP3-204ENST00000409727 IGLV4-69A0A075B6H9 119 aa8.61□□□□□ -1.03
CHMP3-204ENST00000409727 TRAV10A0A0B4J240 114 aa8.61□□□□□ -1.03
CHMP3-204ENST00000409727 TMEM101Q96IK0 257 aa8.61□□□□□ -1.03
CHMP3-204ENST00000409727 TIMM21Q9BVV7 248 aa8.61□□□□□ -1.03
CHMP3-204ENST00000409727 PKIAP61925 76 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 MRPL52Q86TS9 123 aaKnown RBP8.6□□□□□ -1.03
CHMP3-204ENST00000409727 AMELXQ99217 191 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 IGLV4-60A0A075B6I1 120 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 IGKV3OR2-268A0A0C4DH90 116 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 A0A0J9YXV3 536 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 C11orf86A6NJI1 115 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 TSTD3H0UI37 97 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 H3BNG1 76 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 H7C423 109 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 ANKRD39Q53RE8 183 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 LYPD5Q6UWN5 251 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 SH2D6Q7Z4S9 175 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 C14orf144Q96I85 54 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 C2orf88Q9BSF0 95 aa8.6□□□□□ -1.03
CHMP3-204ENST00000409727 HUWE1Q7Z6Z7 4374 aaKnown RBP8.59□□□□□ -1.03
CHMP3-204ENST00000409727 MRPS36P82909 103 aaKnown RBP8.59□□□□□ -1.03
CHMP3-204ENST00000409727 SMAGPQ0VAQ4 97 aa8.59□□□□□ -1.03
CHMP3-204ENST00000409727 MPV17L2Q567V2 206 aa8.59□□□□□ -1.03
CHMP3-204ENST00000409727 CDC42SE2Q9NRR3 84 aa8.59□□□□□ -1.03
CHMP3-204ENST00000409727 CSDC2Q9Y534 153 aaKnown RBP8.59□□□□□ -1.03
CHMP3-204ENST00000409727 TRAV13-1A0A0B4J241 112 aa8.58□□□□□ -1.04
CHMP3-204ENST00000409727 NPSP0C0P6 89 aa8.58□□□□□ -1.04
CHMP3-204ENST00000409727 NHLRC4P0CG21 123 aaPredicted RBP8.58□□□□□ -1.04
CHMP3-204ENST00000409727 Q8N3U1 123 aa8.58□□□□□ -1.04
CHMP3-204ENST00000409727 CHAC1Q9BUX1 264 aa8.58□□□□□ -1.04
CHMP3-204ENST00000409727 TP73-AS1Q9UF72 201 aa8.58□□□□□ -1.04
CHMP3-204ENST00000409727 ZNF25P17030 456 aaPredicted RBP8.57□□□□□ -1.04
CHMP3-204ENST00000409727 TMEM170BQ5T4T1 132 aa8.57□□□□□ -1.04
CHMP3-204ENST00000409727 LELP1Q5T871 98 aa8.57□□□□□ -1.04
CHMP3-204ENST00000409727 COL7A1Q02388 2944 aa8.57□□□□□ -1.04
CHMP3-204ENST00000409727 IGLL5B9A064 214 aa8.57□□□□□ -1.04
CHMP3-204ENST00000409727 NMUP48645 174 aa8.57□□□□□ -1.04
CHMP3-204ENST00000409727 RBX1P62877 108 aa8.57□□□□□ -1.04
CHMP3-204ENST00000409727 CLPSL2Q6UWE3 100 aa8.56□□□□□ -1.04
CHMP3-204ENST00000409727 MEGF8Q7Z7M0 2845 aa8.56□□□□□ -1.04
CHMP3-204ENST00000409727 IGKV2D-26A0A0A0MRZ7 120 aa8.55□□□□□ -1.04
CHMP3-204ENST00000409727 IGLC3P0DOY3 106 aa8.55□□□□□ -1.04
CHMP3-204ENST00000409727 UBE2D1P51668 147 aa8.55□□□□□ -1.04
CHMP3-204ENST00000409727 ESRGQ1W209 222 aa8.55□□□□□ -1.04
CHMP3-204ENST00000409727 NFE4Q86UQ8 179 aa8.55□□□□□ -1.04
CHMP3-204ENST00000409727 IGHV3-64A0A075B6Q5 118 aa8.54□□□□□ -1.04
CHMP3-204ENST00000409727 GEMIN7Q9H840 131 aaKnown RBP8.54□□□□□ -1.04
CHMP3-204ENST00000409727 TRAV8-6A0A0B4J262 113 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 ANGP03950 147 aaKnown RBP8.53□□□□□ -1.04
CHMP3-204ENST00000409727 ZNF22P17026 224 aaPredicted RBP8.53□□□□□ -1.04
CHMP3-204ENST00000409727 DDTP30046 118 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 COX6A2Q02221 97 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 WFDC10BQ8IUB3 73 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 TTTY13Q9BZ97 58 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 A0A1B0GUV1 79 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 TINCRA0A1B0GVN0 87 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 IGHV3-30P01768 117 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 IGHV3-33P01772 117 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 IGHV3-30-3P0DP02 117 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 IGHV3-30-5P0DP03 117 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 LINC00242Q5T6M2 205 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 PCP2Q8IVA1 136 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 LINC00269Q8N2A0 174 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 LINC00469Q8N7U9 141 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 MIEN1Q9BRT3 115 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 UQCR10Q9UDW1 63 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 STAB2Q8WWQ8 2551 aa8.53□□□□□ -1.04
CHMP3-204ENST00000409727 C15orf53Q8NAA6 179 aa8.52□□□□□ -1.05
CHMP3-204ENST00000409727 HERVK_113P61574 105 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 DNAH9Q9NYC9 4486 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 COX8AP10176 69 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 TIRAPP58753 221 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 LCE2CQ5TA81 110 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 SLC25A34Q6PIV7 304 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 CDKN2A-AS1Q9UH64 79 aa8.51□□□□□ -1.05
CHMP3-204ENST00000409727 TMEM223A0PJW6 202 aa8.5□□□□□ -1.05
CHMP3-204ENST00000409727 LINC00587B1AMM8 73 aa8.5□□□□□ -1.05
CHMP3-204ENST00000409727 E9PLD3 99 aa8.5□□□□□ -1.05
CHMP3-204ENST00000409727 SPINK8P0C7L1 97 aa8.5□□□□□ -1.05
CHMP3-204ENST00000409727 HERVK_113P63121 156 aa8.5□□□□□ -1.05
CHMP3-204ENST00000409727 LCE2AQ5TA79 106 aaPredicted RBP8.5□□□□□ -1.05
CHMP3-204ENST00000409727 KLK12Q9UKR0 248 aa8.5□□□□□ -1.05
CHMP3-204ENST00000409727 PRKDCP78527 4128 aaKnown RBP8.49□□□□□ -1.05
CHMP3-204ENST00000409727 TRAV8-3A0A0A6YYJ7 113 aa8.49□□□□□ -1.05
CHMP3-204ENST00000409727 LINC00959A0A1B0GUT2 108 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 166.8 ms