RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TEX48A0A1B0GUV7 120 aa9.48□□□□□ -0.89
LIMS1-204ENST00000409441 CRYBA4P53673 196 aa9.48□□□□□ -0.89
LIMS1-204ENST00000409441 NANOS2P60321 138 aaKnown RBP9.48□□□□□ -0.89
LIMS1-204ENST00000409441 UBE2V1Q13404 147 aa9.48□□□□□ -0.89
LIMS1-204ENST00000409441 LINC00612Q8N6U2 182 aa9.48□□□□□ -0.89
LIMS1-204ENST00000409441 MAPKAPK5-AS1Q8N8E1 139 aa9.48□□□□□ -0.89
LIMS1-204ENST00000409441 TTTY13Q9BZ97 58 aa9.48□□□□□ -0.89
LIMS1-204ENST00000409441 MYMXA0A1B0GTQ4 84 aa9.47□□□□□ -0.89
LIMS1-204ENST00000409441 C11orf86A6NJI1 115 aa9.47□□□□□ -0.89
LIMS1-204ENST00000409441 DAD1P61803 113 aa9.47□□□□□ -0.89
LIMS1-204ENST00000409441 Q6ZVH6 145 aa9.47□□□□□ -0.89
LIMS1-204ENST00000409441 NFE4Q86UQ8 179 aa9.47□□□□□ -0.89
LIMS1-204ENST00000409441 PRADC1Q9BSG0 188 aa9.46□□□□□ -0.89
LIMS1-204ENST00000409441 TM2D2Q9BX73 214 aa9.46□□□□□ -0.89
LIMS1-204ENST00000409441 IGLV4-3A0A075B6K6 122 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 TRGV2A0A075B6R0 118 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 Q6ZSN1 163 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 PTTG1IPP53801 180 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 VAMP3Q15836 100 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 CEND1Q8N111 149 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 OR4C5Q8NGB2 326 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 DEFB104AQ8WTQ1 72 aa9.45□□□□□ -0.9
LIMS1-204ENST00000409441 TRAV4A0A0B4J268 109 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 C9orf118A6NHY6 69 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 CIDEAO60543 219 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 GCSHP23434 173 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 Q6ZTC4 211 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 VCX2Q9H322 139 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 SPANXA1Q9NS26 97 aa9.44□□□□□ -0.9
LIMS1-204ENST00000409441 TRBV10-1A0A0K0K1A3 114 aa9.43□□□□□ -0.9
LIMS1-204ENST00000409441 SMIM13P0DJ93 91 aa9.43□□□□□ -0.9
LIMS1-204ENST00000409441 AMELXQ99217 191 aa9.43□□□□□ -0.9
LIMS1-204ENST00000409441 ZNF815PA8K554 130 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 CCL25O15444 150 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 FXYD2P54710 66 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 COTL1Q14019 142 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 TMEM170BQ5T4T1 132 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 ZNRF2Q8NHG8 242 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 WWC2-AS2Q96NR7 200 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 CHCHD7Q9BUK0 85 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 TRBV7-3A0A075B6L6 115 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 ATP5G1P05496 136 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 HTN3P15516 51 aa9.42□□□□□ -0.9
LIMS1-204ENST00000409441 ZNF479Q96JC4 524 aa9.41□□□□□ -0.9
LIMS1-204ENST00000409441 HIST1H4GQ99525 98 aa9.41□□□□□ -0.9
LIMS1-204ENST00000409441 OPRPNQ99935 248 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-204ENST00000409441 DEFB131BA0A096LNP1 70 aa9.4□□□□□ -0.9
LIMS1-204ENST00000409441 K7EQD1 137 aa9.4□□□□□ -0.9
LIMS1-204ENST00000409441 RPL36AP83881 106 aaKnown RBP9.4□□□□□ -0.9
LIMS1-204ENST00000409441 AMMECR1LQ6DCA0 310 aa9.4□□□□□ -0.9
LIMS1-204ENST00000409441 PHLDA1Q8WV24 401 aaPredicted RBP9.4□□□□□ -0.9
LIMS1-204ENST00000409441 RPL36ALQ969Q0 106 aaKnown RBP9.4□□□□□ -0.9
LIMS1-204ENST00000409441 TIMM21Q9BVV7 248 aa9.4□□□□□ -0.9
LIMS1-204ENST00000409441 UBE2D4Q9Y2X8 147 aa9.4□□□□□ -0.9
LIMS1-204ENST00000409441 TRAV10A0A0B4J240 114 aa9.39□□□□□ -0.91
LIMS1-204ENST00000409441 TMEM223A0PJW6 202 aa9.39□□□□□ -0.91
LIMS1-204ENST00000409441 F5H768 121 aa9.39□□□□□ -0.91
LIMS1-204ENST00000409441 LEPROTO15243 131 aa9.39□□□□□ -0.91
LIMS1-204ENST00000409441 ZNF22P17026 224 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-204ENST00000409441 MRPS36P82909 103 aaKnown RBP9.39□□□□□ -0.91
LIMS1-204ENST00000409441 Q9UF83 564 aa9.39□□□□□ -0.91
LIMS1-204ENST00000409441 FHL2Q14192 279 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 SCGB1D4Q6XE38 83 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 MUC7Q8TAX7 377 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 FAM104AQ969W3 186 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 TRGV4A0A0C4DH28 118 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 A0A0J9YXV3 536 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 J3QQQ9 107 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 SMAGPQ0VAQ4 97 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 GTF2H5Q6ZYL4 71 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 DAZ4Q86SG3 579 aaKnown RBP9.38□□□□□ -0.91
LIMS1-204ENST00000409441 PLEKHB2Q96CS7 222 aa9.38□□□□□ -0.91
LIMS1-204ENST00000409441 DAZ3Q9NR90 486 aaKnown RBP9.38□□□□□ -0.91
LIMS1-204ENST00000409441 SPANXB1Q9NS25 103 aaPredicted RBP9.38□□□□□ -0.91
LIMS1-204ENST00000409441 H3BUT2 72 aa9.37□□□□□ -0.91
LIMS1-204ENST00000409441 LGALS3P17931 250 aaKnown RBP9.37□□□□□ -0.91
LIMS1-204ENST00000409441 RAB37Q96AX2 223 aa9.37□□□□□ -0.91
LIMS1-204ENST00000409441 NHP2Q9NX24 153 aaKnown RBP9.37□□□□□ -0.91
LIMS1-204ENST00000409441 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-204ENST00000409441 IGHV3-38A0A0C4DH36 116 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 TMEM238LA0A1B0GVL6 79 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 TINCRA0A1B0GVN0 87 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 A0A1B0GWB2 263 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 IGKV2-29A2NJV5 120 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-204ENST00000409441 A6NJY4 79 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 UBE2D3P61077 147 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 UBE2D2P62837 147 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 ZFAND6Q6FIF0 208 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 CEMP1Q6PRD7 247 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-204ENST00000409441 OR5A1Q8NGJ0 315 aa9.36□□□□□ -0.91
LIMS1-204ENST00000409441 A0A0J9YY99 117 aa9.35□□□□□ -0.91
LIMS1-204ENST00000409441 A0A1W2PPM0 123 aa9.35□□□□□ -0.91
LIMS1-204ENST00000409441 GAGE10A6NGK3 116 aa9.35□□□□□ -0.91
LIMS1-204ENST00000409441 K7EP13 123 aa9.35□□□□□ -0.91
LIMS1-204ENST00000409441 TSPEAR-AS2P59090 65 aa9.35□□□□□ -0.91
LIMS1-204ENST00000409441 TRAV26-1A0A087WT03 109 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 TRBV6-4A0A1B0GX49 114 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 NUPR2A6NF83 97 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 K7EP34 96 aa9.34□□□□□ -0.91
LIMS1-204ENST00000409441 Q6ZUT4 128 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms