RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 Q8N976 141 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 FGF23Q9GZV9 251 aaPredicted RBP5.47□□□□□ -1.53
SCN9A-202ENST00000409435 UBE2D4Q9Y2X8 147 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 UNQ9165/PRO28630Q6UXU0 137 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 C16orf90A8MZG2 172 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 CEMP1Q6PRD7 247 aaPredicted RBP5.47□□□□□ -1.53
SCN9A-202ENST00000409435 TRBV7-3A0A075B6L6 115 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 A0A087WZ39 114 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 Q6ZRM9 215 aa5.47□□□□□ -1.53
SCN9A-202ENST00000409435 A0A0J9YXV3 536 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 NCR3O14931 201 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 XGP55808 180 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 DYSFO75923 2080 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 COX7BP24311 80 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 SPTBN4Q9H254 2564 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 PLCE1Q9P212 2302 aa5.46□□□□□ -1.53
SCN9A-202ENST00000409435 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.46□□□□□ -1.54
SCN9A-202ENST00000409435 IGKV2-29A2NJV5 120 aaPredicted RBP5.46□□□□□ -1.54
SCN9A-202ENST00000409435 NDUFA1O15239 70 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 TTTY13Q9BZ97 58 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 LENEPQ9Y5L5 61 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 K7EIM0 57 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 MIAQ16674 131 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 MDFIQ99750 246 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 TRAV7A0A075B6U4 112 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 I3L2K1 104 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 FHL3Q13643 280 aa5.46□□□□□ -1.54
SCN9A-202ENST00000409435 C1orf229Q6ZS94 237 aaPredicted RBP5.46□□□□□ -1.54
SCN9A-202ENST00000409435 DAND5Q8N907 189 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 LOC107984640A0A0U1RRK4 108 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 IGLV3-1P01715 115 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 QRFPP83859 136 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 SCXQ7RTU7 201 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 TOMM6Q96B49 74 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 MRPS12O15235 138 aaKnown RBP5.45□□□□□ -1.54
SCN9A-202ENST00000409435 Q6JHZ5 121 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 LINC00322Q6ZN03 302 aaPredicted RBP5.45□□□□□ -1.54
SCN9A-202ENST00000409435 C5orf38Q86SI9 138 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 EBI3Q14213 229 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 FXYD5Q96DB9 178 aa5.45□□□□□ -1.54
SCN9A-202ENST00000409435 KIAA2026Q5HYC2 2103 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 A0A0J9YX75 114 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 GNRH2O43555 120 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 WFDC10BQ8IUB3 73 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 MUC22E2RYF6 1773 aaPredicted RBP5.44□□□□□ -1.54
SCN9A-202ENST00000409435 IGHV1-58A0A0C4DH39 117 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 PSPHP1O15172 72 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 NRACQ8N912 160 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 ZFAND3Q9H8U3 227 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 MSRB1Q9NZV6 116 aa5.44□□□□□ -1.54
SCN9A-202ENST00000409435 TRBV30A0A0K0K1B3 111 aa5.43□□□□□ -1.54
SCN9A-202ENST00000409435 IGLV1-51P01701 117 aa5.43□□□□□ -1.54
SCN9A-202ENST00000409435 UBE2D2P62837 147 aa5.43□□□□□ -1.54
SCN9A-202ENST00000409435 MIR7-3HGQ8N6C7 128 aa5.43□□□□□ -1.54
SCN9A-202ENST00000409435 PPDPFQ9H3Y8 114 aa5.43□□□□□ -1.54
SCN9A-202ENST00000409435 LINC00474Q9P2X8 69 aa5.43□□□□□ -1.54
SCN9A-202ENST00000409435 PKD1L2Q7Z442 2459 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 NOTCH3Q9UM47 2321 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 Q6ZS46 218 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 CCDC140Q96MF4 163 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 MDFICQ9P1T7 246 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 POM121L12Q8N7R1 296 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 JMJD1CQ15652 2540 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 PLA2G1BP04054 148 aaKnown RBP5.42□□□□□ -1.54
SCN9A-202ENST00000409435 PRR20EP86478 221 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 PRR20CP86479 221 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 PRR20DP86480 221 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 PRR20BP86481 221 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 PRR20AP86496 221 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 C9orf85Q96MD7 179 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 LRP4O75096 1905 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 K7EQG2 157 aa5.42□□□□□ -1.54
SCN9A-202ENST00000409435 ZFYVE26Q68DK2 2539 aa5.41□□□□□ -1.54
SCN9A-202ENST00000409435 CFAP126Q5VTH2 177 aa5.41□□□□□ -1.54
SCN9A-202ENST00000409435 PRYO14603 147 aa5.41□□□□□ -1.54
SCN9A-202ENST00000409435 RPL39LQ96EH5 51 aaKnown RBP5.41□□□□□ -1.54
SCN9A-202ENST00000409435 LY6LH3BQJ8 138 aa5.41□□□□□ -1.54
SCN9A-202ENST00000409435 IGLV1-40P01703 118 aa5.41□□□□□ -1.54
SCN9A-202ENST00000409435 UBE2D3P61077 147 aa5.41□□□□□ -1.54
SCN9A-202ENST00000409435 Q6ZTI0 123 aa5.4□□□□□ -1.54
SCN9A-202ENST00000409435 CELA1Q9UNI1 258 aa5.4□□□□□ -1.54
SCN9A-202ENST00000409435 SHANK1Q9Y566 2161 aa5.4□□□□□ -1.54
SCN9A-202ENST00000409435 ARHGAP21Q5T5U3 1957 aa5.4□□□□□ -1.54
SCN9A-202ENST00000409435 IGKV1-17P01599 117 aa5.4□□□□□ -1.55
SCN9A-202ENST00000409435 TMEM254Q8TBM7 123 aa5.4□□□□□ -1.55
SCN9A-202ENST00000409435 TMEM223A0PJW6 202 aa5.4□□□□□ -1.55
SCN9A-202ENST00000409435 IGLV2-8P01709 118 aa5.4□□□□□ -1.55
SCN9A-202ENST00000409435 Q6ZTC4 211 aa5.4□□□□□ -1.55
SCN9A-202ENST00000409435 ABCA12Q86UK0 2595 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 A0A0J9YXY3 114 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 C1orf158Q8N1D5 194 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 TRIAP1O43715 76 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 PLXNB3Q9ULL4 1909 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 SBSPONQ8IVN8 264 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 LIMD2Q9BT23 127 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 PIEZO2Q9H5I5 2752 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 NUP210LQ5VU65 1888 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 TRBV7-6A0A0J9YX20 115 aa5.39□□□□□ -1.55
SCN9A-202ENST00000409435 HEATR5AQ86XA9 2040 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 SPAG11AQ6PDA7 123 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms