RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 FUSP35637 526 aaKnown RBP eCLIP13.09□□□□□ -0.31
PDLIM2-207ENST00000409417 MAP1LC3AQ9H492 121 aa13.09□□□□□ -0.31
PDLIM2-207ENST00000409417 CSDC2Q9Y534 153 aaKnown RBP13.09□□□□□ -0.31
PDLIM2-207ENST00000409417 RAB5AP20339 215 aa13.08□□□□□ -0.32
PDLIM2-207ENST00000409417 SLC7A5P1Q8MH63 180 aa13.08□□□□□ -0.32
PDLIM2-207ENST00000409417 LOC389332A0A1B0GUA5 103 aa13.07□□□□□ -0.32
PDLIM2-207ENST00000409417 DGAT2L7PQ6IED9 249 aa13.07□□□□□ -0.32
PDLIM2-207ENST00000409417 CDC42SE2Q9NRR3 84 aa13.07□□□□□ -0.32
PDLIM2-207ENST00000409417 UBE2D4Q9Y2X8 147 aa13.07□□□□□ -0.32
PDLIM2-207ENST00000409417 LRP1BQ9NZR2 4599 aa13.07□□□□□ -0.32
PDLIM2-207ENST00000409417 DNAH5Q8TE73 4624 aa13.06□□□□□ -0.32
PDLIM2-207ENST00000409417 IGKV3OR2-268A0A0C4DH90 116 aa13.06□□□□□ -0.32
PDLIM2-207ENST00000409417 MT-ND6P03923 174 aa13.06□□□□□ -0.32
PDLIM2-207ENST00000409417 KIAA1644Q3SXP7 199 aa13.06□□□□□ -0.32
PDLIM2-207ENST00000409417 ZNF664Q8N3J9 261 aa13.06□□□□□ -0.32
PDLIM2-207ENST00000409417 TIMM21Q9BVV7 248 aa13.06□□□□□ -0.32
PDLIM2-207ENST00000409417 IGLV5-52A0A0A0MRZ9 124 aa13.05□□□□□ -0.32
PDLIM2-207ENST00000409417 Q8N8P6 123 aa13.05□□□□□ -0.32
PDLIM2-207ENST00000409417 TGIF2-C20orf24A0A0A6YYL0 155 aa13.04□□□□□ -0.32
PDLIM2-207ENST00000409417 C14orf177Q52M58 125 aa13.04□□□□□ -0.32
PDLIM2-207ENST00000409417 USP17L23D6RBM5 183 aa13.04□□□□□ -0.32
PDLIM2-207ENST00000409417 RPL39P62891 51 aaKnown RBP13.04□□□□□ -0.32
PDLIM2-207ENST00000409417 CHCHD10Q8WYQ3 142 aaPredicted RBP13.03□□□□□ -0.32
PDLIM2-207ENST00000409417 NXT2Q9NPJ8 142 aaKnown RBP13.03□□□□□ -0.32
PDLIM2-207ENST00000409417 K7EMI3 77 aa13.02□□□□□ -0.33
PDLIM2-207ENST00000409417 GCSHP23434 173 aa13.02□□□□□ -0.33
PDLIM2-207ENST00000409417 MRPL18Q9H0U6 180 aaKnown RBP13.02□□□□□ -0.33
PDLIM2-207ENST00000409417 SPANXA1Q9NS26 97 aa13.02□□□□□ -0.33
PDLIM2-207ENST00000409417 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.01□□□□□ -0.33
PDLIM2-207ENST00000409417 LINC00959A0A1B0GUT2 108 aa13.01□□□□□ -0.33
PDLIM2-207ENST00000409417 FABP9Q0Z7S8 132 aa13.01□□□□□ -0.33
PDLIM2-207ENST00000409417 ALKBH7Q9BT30 221 aaPredicted RBP13.01□□□□□ -0.33
PDLIM2-207ENST00000409417 GAGE12HA6NDE8 117 aa13□□□□□ -0.33
PDLIM2-207ENST00000409417 CDK2AP2O75956 126 aa13□□□□□ -0.33
PDLIM2-207ENST00000409417 IFI27P40305 119 aaPredicted RBP13□□□□□ -0.33
PDLIM2-207ENST00000409417 KRTAP10-1P60331 282 aa12.99□□□□□ -0.33
PDLIM2-207ENST00000409417 ORMDL2Q53FV1 153 aa12.99□□□□□ -0.33
PDLIM2-207ENST00000409417 SS18Q15532 418 aa12.98□□□□□ -0.33
PDLIM2-207ENST00000409417 Q6ZUT4 128 aa12.98□□□□□ -0.33
PDLIM2-207ENST00000409417 FAM104AQ969W3 186 aa12.98□□□□□ -0.33
PDLIM2-207ENST00000409417 YPEL4Q96NS1 127 aa12.98□□□□□ -0.33
PDLIM2-207ENST00000409417 PRSS1P07477 247 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 XCL1P47992 114 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 MRPS36P82909 103 aaKnown RBP12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 RNASE13Q5GAN3 156 aaKnown RBP12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 PYGO1Q9Y3Y4 419 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 TRAPPC1Q9Y5R8 145 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 C1orf196B1AJZ1 125 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 CCL25O15444 150 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 SMCO4Q9NRQ5 59 aa12.97□□□□□ -0.33
PDLIM2-207ENST00000409417 FOXI1Q12951 378 aa12.96□□□□□ -0.34
PDLIM2-207ENST00000409417 PRSS3P2Q8NHM4 247 aa12.96□□□□□ -0.34
PDLIM2-207ENST00000409417 CYSLTR1Q9Y271 337 aa12.96□□□□□ -0.34
PDLIM2-207ENST00000409417 RYR1P21817 5038 aa12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 HERC2O95714 4834 aa12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 TRAV13-1A0A0B4J241 112 aa12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 CFAP161Q6P656 301 aa12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 CD164L2Q6UWJ8 174 aa12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 C2orf66Q6UXQ4 117 aa12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 OPRPNQ99935 248 aaPredicted RBP12.95□□□□□ -0.34
PDLIM2-207ENST00000409417 G0S2P27469 103 aa12.94□□□□□ -0.34
PDLIM2-207ENST00000409417 CBLN2Q8IUK8 224 aa12.94□□□□□ -0.34
PDLIM2-207ENST00000409417 hDV102S1A0JD36 115 aa12.92□□□□□ -0.34
PDLIM2-207ENST00000409417 LINC01546A6NGU7 62 aa12.92□□□□□ -0.34
PDLIM2-207ENST00000409417 C15orf56Q8N910 161 aa12.92□□□□□ -0.34
PDLIM2-207ENST00000409417 APOBP04114 4563 aaKnown RBP12.91□□□□□ -0.34
PDLIM2-207ENST00000409417 IGLV4-3A0A075B6K6 122 aa12.91□□□□□ -0.34
PDLIM2-207ENST00000409417 TMEM141Q96I45 108 aa12.91□□□□□ -0.34
PDLIM2-207ENST00000409417 IGIPA6NJ69 53 aa12.9□□□□□ -0.34
PDLIM2-207ENST00000409417 NPSP0C0P6 89 aa12.9□□□□□ -0.34
PDLIM2-207ENST00000409417 LINC01620Q4KN68 170 aa12.9□□□□□ -0.34
PDLIM2-207ENST00000409417 IFITM10A6NMD0 228 aa12.89□□□□□ -0.35
PDLIM2-207ENST00000409417 CNBPP62633 177 aaKnown RBP12.89□□□□□ -0.35
PDLIM2-207ENST00000409417 FA2HQ7L5A8 372 aa12.89□□□□□ -0.35
PDLIM2-207ENST00000409417 TOMM6Q96B49 74 aa12.89□□□□□ -0.35
PDLIM2-207ENST00000409417 AP5S1Q9NUS5 200 aa12.89□□□□□ -0.35
PDLIM2-207ENST00000409417 GVQW2A0A096LPI5 108 aaPredicted RBP12.88□□□□□ -0.35
PDLIM2-207ENST00000409417 C18orf32Q8TCD1 76 aa12.88□□□□□ -0.35
PDLIM2-207ENST00000409417 IGHV1-58A0A0C4DH39 117 aa12.87□□□□□ -0.35
PDLIM2-207ENST00000409417 COX7A2LO14548 114 aa12.87□□□□□ -0.35
PDLIM2-207ENST00000409417 XGP55808 180 aa12.87□□□□□ -0.35
PDLIM2-207ENST00000409417 TEX43Q6ZNM6 134 aa12.87□□□□□ -0.35
PDLIM2-207ENST00000409417 HSPG2P98160 4391 aa12.87□□□□□ -0.35
PDLIM2-207ENST00000409417 HIGD2BQ4VC39 106 aa12.86□□□□□ -0.35
PDLIM2-207ENST00000409417 Q6ZN92 141 aa12.86□□□□□ -0.35
PDLIM2-207ENST00000409417 C9orf163Q8N9P6 203 aa12.86□□□□□ -0.35
PDLIM2-207ENST00000409417 TIMM17AQ99595 171 aa12.86□□□□□ -0.35
PDLIM2-207ENST00000409417 LINC01549A6NIU2 74 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 SLPIP03973 132 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 Q6ZSA8 131 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 AMELXQ99217 191 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 VCX2Q9H322 139 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 FAM30AQ9NZY2 134 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 MALP21145 153 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 PAPPA-AS1Q5QFB9 102 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 ERASQ7Z444 233 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 C2orf88Q9BSF0 95 aa12.85□□□□□ -0.35
PDLIM2-207ENST00000409417 IGHV3OR16-9A0A0B4J2B5 98 aa12.84□□□□□ -0.35
PDLIM2-207ENST00000409417 LINC00173Q6ZV60 143 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms