RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 DSCR9P59020 149 aa13.74□□□□□ -0.21
HOXC6-202ENST00000394331 FAM74A4Q5TZK3 123 aa13.74□□□□□ -0.21
HOXC6-202ENST00000394331 TRAV13-1A0A0B4J241 112 aa13.73□□□□□ -0.21
HOXC6-202ENST00000394331 IGHV3-16A0A0C4DH30 117 aa13.72□□□□□ -0.21
HOXC6-202ENST00000394331 DSCR8Q96T75 97 aa13.72□□□□□ -0.21
HOXC6-202ENST00000394331 AVPP01185 164 aa13.72□□□□□ -0.21
HOXC6-202ENST00000394331 TRAV12-3A0A0B4J271 114 aa13.7□□□□□ -0.22
HOXC6-202ENST00000394331 HRCT1Q6UXD1 115 aa13.7□□□□□ -0.22
HOXC6-202ENST00000394331 IGLV5-45A0A087WSX0 123 aa13.7□□□□□ -0.22
HOXC6-202ENST00000394331 MALP21145 153 aa13.7□□□□□ -0.22
HOXC6-202ENST00000394331 OVOL2Q9BRP0 275 aa13.7□□□□□ -0.22
HOXC6-202ENST00000394331 PSMB8P28062 276 aa13.69□□□□□ -0.22
HOXC6-202ENST00000394331 SPTAN1Q13813 2472 aaKnown RBP13.69□□□□□ -0.22
HOXC6-202ENST00000394331 PRIMA1Q86XR5 153 aa13.69□□□□□ -0.22
HOXC6-202ENST00000394331 TMEM89A2RUT3 159 aa13.68□□□□□ -0.22
HOXC6-202ENST00000394331 NDUFC2O95298 119 aa13.68□□□□□ -0.22
HOXC6-202ENST00000394331 DNAL4O96015 105 aa13.68□□□□□ -0.22
HOXC6-202ENST00000394331 SVEP1Q4LDE5 3571 aa13.68□□□□□ -0.22
HOXC6-202ENST00000394331 OBSCN-AS1Q96MR7 158 aa13.68□□□□□ -0.22
HOXC6-202ENST00000394331 A8MZ25 164 aa13.67□□□□□ -0.22
HOXC6-202ENST00000394331 USP17L23D6RBM5 183 aa13.67□□□□□ -0.22
HOXC6-202ENST00000394331 SYNJ2BPP57105 145 aa13.67□□□□□ -0.22
HOXC6-202ENST00000394331 Q8N2B8 174 aa13.67□□□□□ -0.22
HOXC6-202ENST00000394331 IGHV4-59P01825 116 aa13.66□□□□□ -0.22
HOXC6-202ENST00000394331 PF4P02776 101 aa13.66□□□□□ -0.22
HOXC6-202ENST00000394331 DEFB112Q30KQ8 113 aa13.66□□□□□ -0.22
HOXC6-202ENST00000394331 LINC01356Q8N9X3 169 aa13.66□□□□□ -0.22
HOXC6-202ENST00000394331 FAM218AQ96MZ4 157 aa13.66□□□□□ -0.22
HOXC6-202ENST00000394331 LINC01561Q8N1V8 128 aa13.65□□□□□ -0.22
HOXC6-202ENST00000394331 EDN2P20800 178 aa13.65□□□□□ -0.22
HOXC6-202ENST00000394331 EPM2AB3EWF7 344 aa13.64□□□□□ -0.23
HOXC6-202ENST00000394331 UBE2D4Q9Y2X8 147 aa13.64□□□□□ -0.23
HOXC6-202ENST00000394331 ITPR1Q14643 2758 aa13.64□□□□□ -0.23
HOXC6-202ENST00000394331 IGLV5-39A0A0G2JS06 123 aa13.63□□□□□ -0.23
HOXC6-202ENST00000394331 J3QLI3 93 aa13.63□□□□□ -0.23
HOXC6-202ENST00000394331 RPL28P46779 137 aaKnown RBP13.63□□□□□ -0.23
HOXC6-202ENST00000394331 SNRPD3P62318 126 aaKnown RBP13.63□□□□□ -0.23
HOXC6-202ENST00000394331 RNF152Q8N8N0 203 aa13.63□□□□□ -0.23
HOXC6-202ENST00000394331 PRO0628Q9UI54 55 aa13.63□□□□□ -0.23
HOXC6-202ENST00000394331 HIST2H2BCQ6DN03 193 aa13.63□□□□□ -0.23
HOXC6-202ENST00000394331 HIST2H2BDQ6DRA6 164 aa13.63□□□□□ -0.23
HOXC6-202ENST00000394331 SOSTDC1Q6X4U4 206 aa13.62□□□□□ -0.23
HOXC6-202ENST00000394331 CHCHD7Q9BUK0 85 aa13.6□□□□□ -0.23
HOXC6-202ENST00000394331 PKD1L2Q7Z442 2459 aa13.6□□□□□ -0.23
HOXC6-202ENST00000394331 LINC00846Q9NV44 126 aa13.6□□□□□ -0.23
HOXC6-202ENST00000394331 CDKN2A-AS1Q9UH64 79 aa13.6□□□□□ -0.23
HOXC6-202ENST00000394331 IGKV3D-7A0A0C4DH55 119 aa13.6□□□□□ -0.23
HOXC6-202ENST00000394331 K7EQG2 157 aa13.59□□□□□ -0.23
HOXC6-202ENST00000394331 C10orf99Q6UWK7 81 aa13.59□□□□□ -0.23
HOXC6-202ENST00000394331 Q9H8V8 135 aa13.59□□□□□ -0.23
HOXC6-202ENST00000394331 SPG11Q96JI7 2443 aa13.59□□□□□ -0.23
HOXC6-202ENST00000394331 FHL2Q14192 279 aa13.59□□□□□ -0.23
HOXC6-202ENST00000394331 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.58□□□□□ -0.23
HOXC6-202ENST00000394331 IGHV1OR15-1A0A075B7D0 117 aa13.58□□□□□ -0.24
HOXC6-202ENST00000394331 TRAV13-2A0A0B4J235 113 aa13.58□□□□□ -0.24
HOXC6-202ENST00000394331 RNASE13Q5GAN3 156 aaKnown RBP13.58□□□□□ -0.24
HOXC6-202ENST00000394331 ATP5EP2Q5VTU8 51 aa13.58□□□□□ -0.24
HOXC6-202ENST00000394331 DOPEY1Q5JWR5 2465 aa13.57□□□□□ -0.24
HOXC6-202ENST00000394331 FAM19A3Q7Z5A8 133 aa13.57□□□□□ -0.24
HOXC6-202ENST00000394331 A0A087WVE0 104 aa13.57□□□□□ -0.24
HOXC6-202ENST00000394331 A0A096LNT2 108 aa13.57□□□□□ -0.24
HOXC6-202ENST00000394331 PFN2P35080 140 aa13.56□□□□□ -0.24
HOXC6-202ENST00000394331 NACAE9PAV3 2078 aa13.56□□□□□ -0.24
HOXC6-202ENST00000394331 IGKV3-20P01619 116 aa13.55□□□□□ -0.24
HOXC6-202ENST00000394331 Q9HAA7 133 aa13.55□□□□□ -0.24
HOXC6-202ENST00000394331 S100A7L2Q5SY68 101 aa13.55□□□□□ -0.24
HOXC6-202ENST00000394331 C14orf132Q9NPU4 83 aa13.55□□□□□ -0.24
HOXC6-202ENST00000394331 ZNF625Q96I27 306 aaPredicted RBP13.54□□□□□ -0.24
HOXC6-202ENST00000394331 SERP1Q9Y6X1 66 aa13.54□□□□□ -0.24
HOXC6-202ENST00000394331 TRAV12-2A0A075B6T6 113 aa13.54□□□□□ -0.24
HOXC6-202ENST00000394331 UBE2E2Q96LR5 201 aa13.54□□□□□ -0.24
HOXC6-202ENST00000394331 F8WDY8 70 aa13.53□□□□□ -0.24
HOXC6-202ENST00000394331 H0YGX0 51 aa13.53□□□□□ -0.24
HOXC6-202ENST00000394331 CSPG4Q6UVK1 2322 aa13.52□□□□□ -0.24
HOXC6-202ENST00000394331 FAM236DA0A1B0GTK5 79 aa13.52□□□□□ -0.24
HOXC6-202ENST00000394331 FAM236CP0DP71 79 aa13.52□□□□□ -0.24
HOXC6-202ENST00000394331 SPINK13Q1W4C9 94 aa13.52□□□□□ -0.24
HOXC6-202ENST00000394331 Q6YL49 198 aa13.52□□□□□ -0.24
HOXC6-202ENST00000394331 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.52□□□□□ -0.24
HOXC6-202ENST00000394331 HOXD3P31249 432 aaPredicted RBP13.52□□□□□ -0.25
HOXC6-202ENST00000394331 PIK3CD-AS1Q5SR53 167 aa13.51□□□□□ -0.25
HOXC6-202ENST00000394331 ZNF702PQ9H963 129 aa13.51□□□□□ -0.25
HOXC6-202ENST00000394331 BCE1O60756 84 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 FSHBP01225 129 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 CRPP02741 224 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 LINC00467Q9BRT7 94 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 MAPK1IP1LQ8NDC0 245 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 SMIM1B2RUZ4 78 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 RS1O15537 224 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 C9orf129Q5T035 196 aaKnown RBP13.5□□□□□ -0.25
HOXC6-202ENST00000394331 TMEM243Q9BU79 118 aa13.5□□□□□ -0.25
HOXC6-202ENST00000394331 TRBV10-3A0A0K0K1G6 114 aa13.49□□□□□ -0.25
HOXC6-202ENST00000394331 GHRHP01286 108 aa13.49□□□□□ -0.25
HOXC6-202ENST00000394331 COL12A1Q99715 3063 aa13.49□□□□□ -0.25
HOXC6-202ENST00000394331 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.49□□□□□ -0.25
HOXC6-202ENST00000394331 IGKV2-29A2NJV5 120 aaPredicted RBP13.49□□□□□ -0.25
HOXC6-202ENST00000394331 RBMY1BA6NDE4 496 aaKnown RBP13.49□□□□□ -0.25
HOXC6-202ENST00000394331 RBMY1EA6NEQ0 496 aaKnown RBP13.49□□□□□ -0.25
HOXC6-202ENST00000394331 RBMY1DP0C7P1 496 aaKnown RBP13.49□□□□□ -0.25
HOXC6-202ENST00000394331 RBMY1A1P0DJD3 496 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms