RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZFP36P26651 326 aaKnown RBP8.86□□□□□ -0.99
SYNPO-202ENST00000394243 MAP6D1Q9H9H5 199 aa8.86□□□□□ -0.99
SYNPO-202ENST00000394243 KLK5Q9Y337 293 aaPredicted RBP8.86□□□□□ -0.99
SYNPO-202ENST00000394243 TRAV7A0A075B6U4 112 aa8.86□□□□□ -0.99
SYNPO-202ENST00000394243 POM121L12Q8N7R1 296 aa8.86□□□□□ -0.99
SYNPO-202ENST00000394243 PROK1P58294 105 aa8.86□□□□□ -0.99
SYNPO-202ENST00000394243 Q6ZQY7 126 aa8.85□□□□□ -0.99
SYNPO-202ENST00000394243 C1orf229Q6ZS94 237 aaPredicted RBP8.85□□□□□ -0.99
SYNPO-202ENST00000394243 LINC00310P59036 64 aa8.85□□□□□ -0.99
SYNPO-202ENST00000394243 FAM222AQ5U5X8 452 aa8.85□□□□□ -0.99
SYNPO-202ENST00000394243 EBI3Q14213 229 aa8.85□□□□□ -0.99
SYNPO-202ENST00000394243 GPR179Q6PRD1 2367 aa8.85□□□□□ -0.99
SYNPO-202ENST00000394243 IGLV2-11P01706 119 aa8.85□□□□□ -0.99
SYNPO-202ENST00000394243 A0A087WVE0 104 aa8.84□□□□□ -0.99
SYNPO-202ENST00000394243 CRIP2P52943 208 aaPredicted RBP8.84□□□□□ -0.99
SYNPO-202ENST00000394243 FAM19A1Q7Z5A9 133 aa8.84□□□□□ -0.99
SYNPO-202ENST00000394243 ODF3Q96PU9 254 aa8.84□□□□□ -0.99
SYNPO-202ENST00000394243 THSD7BQ9C0I4 1608 aa8.84□□□□□ -0.99
SYNPO-202ENST00000394243 MYCNOSP40205 109 aa8.84□□□□□ -0.99
SYNPO-202ENST00000394243 EIF4EBP1Q13541 118 aaPredicted RBP8.84□□□□□ -0.99
SYNPO-202ENST00000394243 GAS8-AS1O95177 125 aa8.84□□□□□ -0.99
SYNPO-202ENST00000394243 SMAD5-AS1Q9Y6J3 95 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 LINC01548A6NM66 108 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 Q8N9L7 120 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 C4orf3Q8WVX3 66 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 C9orf85Q96MD7 179 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 CELA1Q9UNI1 258 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 MSMPQ1L6U9 139 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 CRIP3Q6Q6R5 217 aa8.83□□□□□ -1
SYNPO-202ENST00000394243 COL4A3Q01955 1670 aa8.82□□□□□ -1
SYNPO-202ENST00000394243 NANOS2P60321 138 aaKnown RBP8.82□□□□□ -1
SYNPO-202ENST00000394243 PYGO1Q9Y3Y4 419 aa8.82□□□□□ -1
SYNPO-202ENST00000394243 TSHBP01222 138 aa8.82□□□□□ -1
SYNPO-202ENST00000394243 KIAA1549LQ6ZVL6 1849 aa8.82□□□□□ -1
SYNPO-202ENST00000394243 PSPHP1O15172 72 aa8.81□□□□□ -1
SYNPO-202ENST00000394243 PPDPFQ9H3Y8 114 aa8.81□□□□□ -1
SYNPO-202ENST00000394243 IGHV4-30-4P0DP06 118 aa8.81□□□□□ -1
SYNPO-202ENST00000394243 IGHV4-31P0DP07 118 aa8.81□□□□□ -1
SYNPO-202ENST00000394243 TMEM89A2RUT3 159 aa8.8□□□□□ -1
SYNPO-202ENST00000394243 TRBV6-8A0A0A6YYG3 113 aa8.8□□□□□ -1
SYNPO-202ENST00000394243 IGKV2-28A0A075B6P5 120 aa8.79□□□□□ -1
SYNPO-202ENST00000394243 IGKV2D-28P01615 120 aa8.79□□□□□ -1
SYNPO-202ENST00000394243 URB1-AS1Q96HZ7 61 aa8.79□□□□□ -1
SYNPO-202ENST00000394243 SHISA2Q6UWI4 295 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 PTPRQQ9UMZ3 2332 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 K7EQG2 157 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 WFDC10AQ9H1F0 79 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 PRYO14603 147 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 NRGNQ92686 78 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 LINC00574Q9H8X3 128 aa8.78□□□□□ -1
SYNPO-202ENST00000394243 J3QKU1 62 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 RNASE3P12724 160 aaKnown RBP8.77□□□□□ -1.01
SYNPO-202ENST00000394243 UBE2D4Q9Y2X8 147 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 Q6ZSV7 163 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 A6NDX4 124 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 UBE2D3P61077 147 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 UBE2D2P62837 147 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 IGFL2Q6UWQ7 119 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 UBE2D1P51668 147 aa8.77□□□□□ -1.01
SYNPO-202ENST00000394243 A0A087WZ39 114 aa8.76□□□□□ -1.01
SYNPO-202ENST00000394243 C11orf21Q9P2W6 132 aa8.76□□□□□ -1.01
SYNPO-202ENST00000394243 AGRNO00468 2067 aa8.76□□□□□ -1.01
SYNPO-202ENST00000394243 NTM-AS1Q6ZSK4 140 aa8.76□□□□□ -1.01
SYNPO-202ENST00000394243 POLR2KP53803 58 aaKnown RBP8.75□□□□□ -1.01
SYNPO-202ENST00000394243 NUP210LQ5VU65 1888 aa8.75□□□□□ -1.01
SYNPO-202ENST00000394243 TECTAO75443 2155 aa8.75□□□□□ -1.01
SYNPO-202ENST00000394243 PRR9Q5T870 116 aa8.75□□□□□ -1.01
SYNPO-202ENST00000394243 ATG2AQ2TAZ0 1938 aa8.74□□□□□ -1.01
SYNPO-202ENST00000394243 PLA2G2CQ5R387 149 aa8.74□□□□□ -1.01
SYNPO-202ENST00000394243 SPINK6Q6UWN8 80 aa8.74□□□□□ -1.01
SYNPO-202ENST00000394243 LINC00208Q96KT6 92 aa8.74□□□□□ -1.01
SYNPO-202ENST00000394243 ODF3BA8MYP8 253 aa8.74□□□□□ -1.01
SYNPO-202ENST00000394243 DEFB113Q30KQ7 82 aa8.74□□□□□ -1.01
SYNPO-202ENST00000394243 CRYGDP07320 174 aa8.73□□□□□ -1.01
SYNPO-202ENST00000394243 CSPG4Q6UVK1 2322 aa8.73□□□□□ -1.01
SYNPO-202ENST00000394243 M0R378 163 aa8.73□□□□□ -1.01
SYNPO-202ENST00000394243 IGIPA6NJ69 53 aa8.73□□□□□ -1.01
SYNPO-202ENST00000394243 DHRS4-AS1Q9P1J3 65 aa8.73□□□□□ -1.01
SYNPO-202ENST00000394243 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.72□□□□□ -1.01
SYNPO-202ENST00000394243 PRO0628Q9UI54 55 aa8.72□□□□□ -1.01
SYNPO-202ENST00000394243 A0A087WYN8 130 aa8.72□□□□□ -1.01
SYNPO-202ENST00000394243 Q8N3U1 123 aa8.72□□□□□ -1.01
SYNPO-202ENST00000394243 TRBV6-4A0A1B0GX49 114 aa8.72□□□□□ -1.01
SYNPO-202ENST00000394243 CDIP1Q9H305 208 aa8.72□□□□□ -1.01
SYNPO-202ENST00000394243 TRBV7-7A0A0K0K1E9 115 aa8.71□□□□□ -1.01
SYNPO-202ENST00000394243 SYCNQ0VAF6 134 aa8.71□□□□□ -1.01
SYNPO-202ENST00000394243 C14orf177Q52M58 125 aa8.71□□□□□ -1.01
SYNPO-202ENST00000394243 CD164L2Q6UWJ8 174 aa8.71□□□□□ -1.01
SYNPO-202ENST00000394243 ZNF73O43830 326 aaPredicted RBP8.71□□□□□ -1.02
SYNPO-202ENST00000394243 KIR2DL5BQ8NHK3 375 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 TRBV7-6A0A0J9YX20 115 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 WISP2O76076 250 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 Q8N814 137 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 LINC00959A0A1B0GUT2 108 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 TSPEAR-AS2P59090 65 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 DEFB114Q30KQ6 69 aa8.71□□□□□ -1.02
SYNPO-202ENST00000394243 PRRC2AP48634 2157 aaKnown RBP8.71□□□□□ -1.02
SYNPO-202ENST00000394243 LY6LH3BQJ8 138 aa8.7□□□□□ -1.02
SYNPO-202ENST00000394243 DNAJC9-AS1A6NH13 148 aa8.7□□□□□ -1.02
SYNPO-202ENST00000394243 RPL37AP8A6NKH3 93 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms