RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 POLR2KP53803 58 aaKnown RBP8.96□□□□□ -0.98
CIITA-202ENST00000381835 UBE2D3P61077 147 aa8.95□□□□□ -0.98
CIITA-202ENST00000381835 UBE2D2P62837 147 aa8.95□□□□□ -0.98
CIITA-202ENST00000381835 SYT8Q8NBV8 401 aa8.95□□□□□ -0.98
CIITA-202ENST00000381835 LINC00467Q9BRT7 94 aa8.95□□□□□ -0.98
CIITA-202ENST00000381835 APOC4P55056 127 aa8.94□□□□□ -0.98
CIITA-202ENST00000381835 ZNF415Q09FC8 603 aa8.94□□□□□ -0.98
CIITA-202ENST00000381835 SDHAF1A6NFY7 115 aa8.94□□□□□ -0.98
CIITA-202ENST00000381835 NFE4Q86UQ8 179 aa8.94□□□□□ -0.98
CIITA-202ENST00000381835 TIMM17AQ99595 171 aa8.94□□□□□ -0.98
CIITA-202ENST00000381835 TSPEAR-AS2P59090 65 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 DEFB135Q30KP9 77 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 ZNF876PQ49A33 203 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 C11orf72Q8NBR9 251 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 KIR2DL5BQ8NHK3 375 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 IGHV3-30P01768 117 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 PRB2P02812 416 aaPredicted RBP8.93□□□□□ -0.98
CIITA-202ENST00000381835 CFC1BP0CG36 223 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 CFC1P0CG37 223 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 IGHV3-30-5P0DP03 117 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 FAM74A4Q5TZK3 123 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 SLC25A29Q8N8R3 303 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 ZNRF2Q8NHG8 242 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 PTH2Q96A98 100 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 SS18L2Q9UHA2 77 aa8.93□□□□□ -0.98
CIITA-202ENST00000381835 TCL1BO95988 128 aa8.92□□□□□ -0.98
CIITA-202ENST00000381835 LGALS3P17931 250 aaKnown RBP8.92□□□□□ -0.98
CIITA-202ENST00000381835 TMEM263Q8WUH6 116 aaKnown RBP8.92□□□□□ -0.98
CIITA-202ENST00000381835 TRBV20-1A0A075B6N2 111 aa8.92□□□□□ -0.98
CIITA-202ENST00000381835 TRBV27A0A0K0K1C4 114 aa8.92□□□□□ -0.98
CIITA-202ENST00000381835 J3QQQ9 107 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 SCGB1C2P0DMR2 95 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 C10orf126Q8N4M7 172 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 CDIP1Q9H305 208 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 M0R2P5 195 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 PPDPFLQ8WWR9 84 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 PRO1854Q9UHT4 67 aa8.91□□□□□ -0.98
CIITA-202ENST00000381835 TRBV6-5A0A0K0K1A5 114 aa8.9□□□□□ -0.98
CIITA-202ENST00000381835 ZNF56Q15929 161 aa8.9□□□□□ -0.98
CIITA-202ENST00000381835 TEN1Q86WV5 123 aa8.9□□□□□ -0.98
CIITA-202ENST00000381835 C16orf74Q96GX8 76 aa8.9□□□□□ -0.98
CIITA-202ENST00000381835 NACAE9PAV3 2078 aa8.9□□□□□ -0.99
CIITA-202ENST00000381835 A8MWV9 139 aa8.89□□□□□ -0.99
CIITA-202ENST00000381835 GAGE5Q13069 117 aa8.89□□□□□ -0.99
CIITA-202ENST00000381835 GAGE6Q13070 117 aa8.89□□□□□ -0.99
CIITA-202ENST00000381835 CARD19Q96LW7 228 aa8.89□□□□□ -0.99
CIITA-202ENST00000381835 SPINK8P0C7L1 97 aa8.89□□□□□ -0.99
CIITA-202ENST00000381835 AMELXQ99217 191 aa8.89□□□□□ -0.99
CIITA-202ENST00000381835 OPRPNQ99935 248 aaPredicted RBP8.89□□□□□ -0.99
CIITA-202ENST00000381835 NOP10Q9NPE3 64 aaKnown RBP8.89□□□□□ -0.99
CIITA-202ENST00000381835 TRGV1A0A0A0MS02 117 aa8.88□□□□□ -0.99
CIITA-202ENST00000381835 ERG28Q9UKR5 140 aa8.88□□□□□ -0.99
CIITA-202ENST00000381835 X6R8D5 127 aa8.88□□□□□ -0.99
CIITA-202ENST00000381835 PLAC8L1A1L4L8 177 aa8.88□□□□□ -0.99
CIITA-202ENST00000381835 A8MZ25 164 aa8.88□□□□□ -0.99
CIITA-202ENST00000381835 IL17DQ8TAD2 202 aa8.88□□□□□ -0.99
CIITA-202ENST00000381835 M0QY20 66 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 LEPROTO15243 131 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 SBSPONQ8IVN8 264 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 VCX2Q9H322 139 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 DNHD1Q96M86 4753 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 IGHV3-64A0A075B6Q5 118 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 IGHV3-73A0A0B4J1V6 119 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 TMEM223A0PJW6 202 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 A4D1N5 150 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 MT-ATP8P03928 68 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 RHOHQ15669 191 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 Q6ZTI0 123 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 Q6ZUT4 128 aa8.87□□□□□ -0.99
CIITA-202ENST00000381835 ANKRD29Q8N6D5 301 aa8.86□□□□□ -0.99
CIITA-202ENST00000381835 SMIM9A6NGZ8 99 aa8.86□□□□□ -0.99
CIITA-202ENST00000381835 XGP55808 180 aa8.86□□□□□ -0.99
CIITA-202ENST00000381835 DAZ2Q13117 558 aaKnown RBP8.86□□□□□ -0.99
CIITA-202ENST00000381835 RNF183Q96D59 192 aa8.86□□□□□ -0.99
CIITA-202ENST00000381835 H7C2G1 150 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 DEFB4AO15263 64 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 P0DMU3 169 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 FAM231AP0DMU4 169 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 FAM231CP0DMU5 169 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 K7EIL1 84 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 RHODO00212 210 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 GAGE7O76087 117 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 GAGE12FP0CL80 117 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 GAGE12GP0CL81 117 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 GAGE12IP0CL82 117 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 ZNF22P17026 224 aaPredicted RBP8.85□□□□□ -0.99
CIITA-202ENST00000381835 DEFB121Q5J5C9 76 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 PIK3CD-AS1Q5SR53 167 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 KPRPQ5T749 579 aaPredicted RBP8.85□□□□□ -0.99
CIITA-202ENST00000381835 MUSTN1Q8IVN3 82 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 C20orf203Q8NBC4 194 aa8.85□□□□□ -0.99
CIITA-202ENST00000381835 C9JAW5 83 aa8.84□□□□□ -0.99
CIITA-202ENST00000381835 I3L3M4 83 aa8.84□□□□□ -0.99
CIITA-202ENST00000381835 SLC25A20O43772 301 aa8.84□□□□□ -0.99
CIITA-202ENST00000381835 IGHV3-33P01772 117 aa8.84□□□□□ -0.99
CIITA-202ENST00000381835 RETNQ9HD89 108 aa8.84□□□□□ -0.99
CIITA-202ENST00000381835 A0A0J9YXV3 536 aa8.83□□□□□ -1
CIITA-202ENST00000381835 OVOL2Q9BRP0 275 aa8.83□□□□□ -1
CIITA-202ENST00000381835 TRGV2A0A075B6R0 118 aa8.83□□□□□ -1
CIITA-202ENST00000381835 A0A0B4J2C4 111 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms