RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 A0A0J9YXY3 114 aa6.34□□□□□ -1.4
VPS36-201ENST00000378060 TNFRSF13BO14836 293 aaPredicted RBP6.34□□□□□ -1.4
VPS36-201ENST00000378060 SMIM20Q8N5G0 67 aa6.34□□□□□ -1.4
VPS36-201ENST00000378060 RNF185Q96GF1 192 aa6.34□□□□□ -1.4
VPS36-201ENST00000378060 ZFHX3Q15911 3703 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 IGKV2D-26A0A0A0MRZ7 120 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 A0A1B0GX51 115 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 TRBV12-3P01733 135 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 TMEM258P61165 79 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 DAND5Q8N907 189 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 DSCAMO60469 2012 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 A0A0J9YY99 117 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 C3orf56Q8N813 242 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 TRAV26-1A0A087WT03 109 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 RS1O15537 224 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 DEFB113Q30KQ7 82 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 TMEM61Q8N0U2 210 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 CLEC2BQ92478 149 aa6.33□□□□□ -1.4
VPS36-201ENST00000378060 DEFB121Q5J5C9 76 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 C2orf91Q6ZV80 131 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 ZFAND2AQ8N6M9 145 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 K7EQG2 157 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 LECT2O14960 151 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 RBM3P98179 157 aaKnown RBP6.32□□□□□ -1.4
VPS36-201ENST00000378060 TP73-AS1Q9UF72 201 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 APCP25054 2843 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 LINC00310P59036 64 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 MIR7-3HGQ8N6C7 128 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 TMEM263Q8WUH6 116 aaKnown RBP6.32□□□□□ -1.4
VPS36-201ENST00000378060 ZNF469Q96JG9 3925 aaPredicted RBP6.32□□□□□ -1.4
VPS36-201ENST00000378060 PDE6GP18545 87 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 MAPKAPK5-AS1Q8N8E1 139 aa6.32□□□□□ -1.4
VPS36-201ENST00000378060 TRBV6-5A0A0K0K1A5 114 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 SPART-AS1P0CW21 52 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 FUSP35637 526 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS36-201ENST00000378060 Q6ZQT7 251 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 ITPR2Q14571 2701 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 LINC01548A6NM66 108 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 PLA2G2AP14555 144 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 ZNF22P17026 224 aaPredicted RBP6.31□□□□□ -1.4
VPS36-201ENST00000378060 HIST2H2BDQ6DRA6 164 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 C1orf43Q9BWL3 253 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 SMAD5-AS1Q9Y6J3 95 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 IGKV3D-7A0A0C4DH55 119 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 TRBV27A0A0K0K1C4 114 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 P0DMU3 169 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 FAM231AP0DMU4 169 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 FAM231CP0DMU5 169 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 C9orf66Q5T8R8 295 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 NFE4Q86UQ8 179 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 C4orf3Q8WVX3 66 aa6.31□□□□□ -1.4
VPS36-201ENST00000378060 J3KT08 172 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 TMEM256-PLSCR3K7ERE1 68 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 CNFNQ9BYD5 112 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 HHLA3Q9XRX5 114 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 hADV29S1A0JD25 119 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 TMEM223A0PJW6 202 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 CAMK2N2Q96S95 79 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 IGLV4-3A0A075B6K6 122 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 IGHV4-4A0A075B6R2 117 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 PSMB8P28062 276 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 TRBV30A0A0K0K1B3 111 aa6.3□□□□□ -1.4
VPS36-201ENST00000378060 IGHV3-33P01772 117 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 NRACQ8N912 160 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 PYGO1Q9Y3Y4 419 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 J3QKU1 62 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 Q8N976 141 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 M0QY20 66 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 NDUFV3P56181 108 aaKnown RBP6.29□□□□□ -1.4
VPS36-201ENST00000378060 MAP6D1Q9H9H5 199 aa6.29□□□□□ -1.4
VPS36-201ENST00000378060 IGKV2D-24A0A075B6R9 120 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 NDUFA1O15239 70 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 MT-ATP8P03928 68 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 TIRAPP58753 221 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 CEMP1Q6PRD7 247 aaPredicted RBP6.28□□□□□ -1.4
VPS36-201ENST00000378060 Q8N6K4 173 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 CDKN2A-AS1Q9UH64 79 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 PRO0255Q9UI72 69 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 AKAP9Q99996 3911 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 SETXQ7Z333 2677 aaKnown RBP6.28□□□□□ -1.4
VPS36-201ENST00000378060 A0A1W2PPR1 153 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 C20orf173Q96LM9 149 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 IGLV10-54A0A075B6I4 117 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 ETDCA0A1B0GVM5 59 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 RNF183Q96D59 192 aa6.28□□□□□ -1.4
VPS36-201ENST00000378060 H7C423 109 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 TIMM17BO60830 172 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 NREPQ16612 68 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 ZMAT4Q9H898 229 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 ARHGAP32A7KAX9 2087 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 SPAG11BQ08648 103 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 JMJD1CQ15652 2540 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 ZANQ9Y493 2812 aa6.27□□□□□ -1.41
VPS36-201ENST00000378060 TEX49A0A1B0GTD5 131 aa6.26□□□□□ -1.41
VPS36-201ENST00000378060 POLR2KP53803 58 aaKnown RBP6.26□□□□□ -1.41
VPS36-201ENST00000378060 DIRC1Q969H9 104 aa6.26□□□□□ -1.41
VPS36-201ENST00000378060 PKIGQ9Y2B9 76 aa6.26□□□□□ -1.41
VPS36-201ENST00000378060 UNC79Q9P2D8 2635 aa6.26□□□□□ -1.41
VPS36-201ENST00000378060 NRGNQ92686 78 aa6.26□□□□□ -1.41
VPS36-201ENST00000378060 TLN2Q9Y4G6 2542 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms