RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 YAE1D1Q9NRH1 226 aa8.09□□□□□ -1.11
CCDC40-203ENST00000374877 SPANXCQ9NY87 97 aa8.09□□□□□ -1.11
CCDC40-203ENST00000374877 CFHR3Q02985 330 aa8.09□□□□□ -1.11
CCDC40-203ENST00000374877 H3BT86 120 aa8.09□□□□□ -1.11
CCDC40-203ENST00000374877 IGHV3-38A0A0C4DH36 116 aa8.08□□□□□ -1.12
CCDC40-203ENST00000374877 RBMY1A1P0DJD3 496 aaKnown RBP8.08□□□□□ -1.12
CCDC40-203ENST00000374877 RBMY1CP0DJD4 496 aa8.08□□□□□ -1.12
CCDC40-203ENST00000374877 RBMY1FQ15415 496 aaKnown RBP8.08□□□□□ -1.12
CCDC40-203ENST00000374877 TMEM61Q8N0U2 210 aa8.08□□□□□ -1.12
CCDC40-203ENST00000374877 PSMB8P28062 276 aa8.08□□□□□ -1.12
CCDC40-203ENST00000374877 A0A0U1RRA0 63 aa8.08□□□□□ -1.12
CCDC40-203ENST00000374877 Q6Q795 121 aa8.08□□□□□ -1.12
CCDC40-203ENST00000374877 NACAE9PAV3 2078 aa8.07□□□□□ -1.12
CCDC40-203ENST00000374877 TINCRA0A1B0GVN0 87 aa8.07□□□□□ -1.12
CCDC40-203ENST00000374877 LST1O00453 97 aa8.07□□□□□ -1.12
CCDC40-203ENST00000374877 LINC01600Q96MT4 127 aa8.07□□□□□ -1.12
CCDC40-203ENST00000374877 NBPF19A0A087WUL8 3843 aa8.07□□□□□ -1.12
CCDC40-203ENST00000374877 Q6ZSN1 163 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 ZNF625Q96I27 306 aaPredicted RBP8.06□□□□□ -1.12
CCDC40-203ENST00000374877 LINC00467Q9BRT7 94 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 CDKN2A-AS1Q9UH64 79 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 UBE2D4Q9Y2X8 147 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 CHCHD7Q9BUK0 85 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 TMEM89A2RUT3 159 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 SPANXA1Q9NS26 97 aa8.06□□□□□ -1.12
CCDC40-203ENST00000374877 Q8N2B8 174 aa8.05□□□□□ -1.12
CCDC40-203ENST00000374877 FASNP49327 2511 aaKnown RBP8.05□□□□□ -1.12
CCDC40-203ENST00000374877 DEFB131AP59861 70 aa8.05□□□□□ -1.12
CCDC40-203ENST00000374877 DGAT2L7PQ6IED9 249 aa8.05□□□□□ -1.12
CCDC40-203ENST00000374877 CSMD2Q7Z408 3487 aa8.05□□□□□ -1.12
CCDC40-203ENST00000374877 ITPR3Q14573 2671 aa8.05□□□□□ -1.12
CCDC40-203ENST00000374877 CIRBPQ14011 172 aaKnown RBP8.04□□□□□ -1.12
CCDC40-203ENST00000374877 ZNF702PQ9H963 129 aa8.04□□□□□ -1.12
CCDC40-203ENST00000374877 HOXD3P31249 432 aaPredicted RBP8.03□□□□□ -1.12
CCDC40-203ENST00000374877 LY6G6DO95868 133 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 CHCHD5Q9BSY4 110 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 HECTD1Q9ULT8 2610 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 TMEM101Q96IK0 257 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 Q9H8V8 135 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 EDA2RQ9HAV5 297 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 NOTCH3Q9UM47 2321 aa8.03□□□□□ -1.12
CCDC40-203ENST00000374877 MEIG1Q5JSS6 88 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 SMIM20Q8N5G0 67 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 AKAP9Q99996 3911 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 FAM240AA0A1B0GVK7 77 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 DNAJC9-AS1A6NH13 148 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 ZNF415Q09FC8 603 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.02□□□□□ -1.13
CCDC40-203ENST00000374877 CITED2Q99967 270 aaPredicted RBP8.02□□□□□ -1.13
CCDC40-203ENST00000374877 C2CD3Q4AC94 2353 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 NDUFA1O15239 70 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 TIMM17BO60830 172 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 MRPL23Q16540 153 aaKnown RBP8.02□□□□□ -1.13
CCDC40-203ENST00000374877 C3orf56Q8N813 242 aa8.02□□□□□ -1.13
CCDC40-203ENST00000374877 ITPR2Q14571 2701 aa8.01□□□□□ -1.13
CCDC40-203ENST00000374877 CCDC168Q8NDH2 2452 aa8.01□□□□□ -1.13
CCDC40-203ENST00000374877 COX6A2Q02221 97 aa8.01□□□□□ -1.13
CCDC40-203ENST00000374877 LINC00308Q8TCZ7 52 aa8.01□□□□□ -1.13
CCDC40-203ENST00000374877 LINC01587Q99440 93 aa8.01□□□□□ -1.13
CCDC40-203ENST00000374877 RBMY1BA6NDE4 496 aaKnown RBP8□□□□□ -1.13
CCDC40-203ENST00000374877 RBMY1EA6NEQ0 496 aaKnown RBP8□□□□□ -1.13
CCDC40-203ENST00000374877 RBMY1DP0C7P1 496 aaKnown RBP8□□□□□ -1.13
CCDC40-203ENST00000374877 DEFB136Q30KP8 78 aa8□□□□□ -1.13
CCDC40-203ENST00000374877 RNASE1P07998 156 aaKnown RBP8□□□□□ -1.13
CCDC40-203ENST00000374877 DEFB121Q5J5C9 76 aa8□□□□□ -1.13
CCDC40-203ENST00000374877 RNF152Q8N8N0 203 aa8□□□□□ -1.13
CCDC40-203ENST00000374877 SLURP1P55000 103 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 HILS1P60008 231 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 SMR3AQ99954 134 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 TRAV13-1A0A0B4J241 112 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 FAM236AA0A1B0GUQ0 79 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 FAM236BA0A1B0GV22 79 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 NDUFA7O95182 113 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 TIRAPP58753 221 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 ESM1Q9NQ30 184 aa7.99□□□□□ -1.13
CCDC40-203ENST00000374877 IGHV3OR16-12A0A075B7B8 117 aa7.98□□□□□ -1.13
CCDC40-203ENST00000374877 COX7A2LO14548 114 aa7.98□□□□□ -1.13
CCDC40-203ENST00000374877 IGHV3-53P01767 116 aa7.98□□□□□ -1.13
CCDC40-203ENST00000374877 ANK3Q12955 4377 aaKnown RBP7.98□□□□□ -1.13
CCDC40-203ENST00000374877 FLNAP21333 2647 aaKnown RBP7.98□□□□□ -1.13
CCDC40-203ENST00000374877 PRIMA1Q86XR5 153 aa7.98□□□□□ -1.13
CCDC40-203ENST00000374877 TRBV7-7A0A0K0K1E9 115 aa7.98□□□□□ -1.13
CCDC40-203ENST00000374877 HERVK_113P63121 156 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 LINC00242Q5T6M2 205 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 SOSTDC1Q6X4U4 206 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 C18orf65Q6ZTR6 163 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 IGLV5-45A0A087WSX0 123 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 HERV-K104P63124 156 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 DNAJC30Q96LL9 226 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 C16orf95Q9H693 158 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 ZANQ9Y493 2812 aa7.97□□□□□ -1.13
CCDC40-203ENST00000374877 DAZ2Q13117 558 aaKnown RBP7.96□□□□□ -1.13
CCDC40-203ENST00000374877 DAZ4Q86SG3 579 aaKnown RBP7.96□□□□□ -1.13
CCDC40-203ENST00000374877 DAZ3Q9NR90 486 aaKnown RBP7.96□□□□□ -1.13
CCDC40-203ENST00000374877 LINC00694P0DN24 101 aa7.96□□□□□ -1.14
CCDC40-203ENST00000374877 MYO9AB2RTY4 2548 aa7.96□□□□□ -1.14
CCDC40-203ENST00000374877 ACYP1P07311 99 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 KHDC1LQ5JSQ8 128 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 C11orf72Q8NBR9 251 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 UBE2E2Q96LR5 201 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms