RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 IGLV5-45A0A087WSX0 123 aa11.81□□□□□ -0.52
SDC4-201ENST00000372733 HIST2H2BDQ6DRA6 164 aa11.81□□□□□ -0.52
SDC4-201ENST00000372733 LINC01356Q8N9X3 169 aa11.81□□□□□ -0.52
SDC4-201ENST00000372733 CENPEQ02224 2701 aa11.81□□□□□ -0.52
SDC4-201ENST00000372733 MAP6D1Q9H9H5 199 aa11.81□□□□□ -0.52
SDC4-201ENST00000372733 DOPEY1Q5JWR5 2465 aa11.81□□□□□ -0.52
SDC4-201ENST00000372733 NDUFA7O95182 113 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 TIRAPP58753 221 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 PIK3CD-AS1Q5SR53 167 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 LINC00308Q8TCZ7 52 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 MYO18BQ8IUG5 2567 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 MXRA5Q9NR99 2828 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 DNAJC30Q96LL9 226 aa11.8□□□□□ -0.52
SDC4-201ENST00000372733 POLQO75417 2590 aa11.79□□□□□ -0.52
SDC4-201ENST00000372733 LINC00694P0DN24 101 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 LINC00242Q5T6M2 205 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 SOSTDC1Q6X4U4 206 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 IGLV5-39A0A0G2JS06 123 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 GAGE12JA6NER3 117 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 RS1O15537 224 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 GAGE7O76087 117 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 GAGE12FP0CL80 117 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 GAGE12GP0CL81 117 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 GAGE12IP0CL82 117 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 GAGE4Q13068 117 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 CIRBPQ14011 172 aaKnown RBP11.78□□□□□ -0.52
SDC4-201ENST00000372733 BEAN1Q3B7T3 259 aa11.78□□□□□ -0.52
SDC4-201ENST00000372733 INSP01308 110 aa11.77□□□□□ -0.52
SDC4-201ENST00000372733 DEFB121Q5J5C9 76 aa11.77□□□□□ -0.52
SDC4-201ENST00000372733 KHDC1LQ5JSQ8 128 aa11.77□□□□□ -0.53
SDC4-201ENST00000372733 FAM240AA0A1B0GVK7 77 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 Q8N2B8 174 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 XCL2Q9UBD3 114 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 A0A096LNT2 108 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 TRAV13-1A0A0B4J241 112 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 SMIM1B2RUZ4 78 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 SVIPQ8NHG7 77 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 DYNLRB2Q8TF09 96 aa11.76□□□□□ -0.53
SDC4-201ENST00000372733 HERVK_113P63121 156 aa11.75□□□□□ -0.53
SDC4-201ENST00000372733 Q6YL49 198 aa11.75□□□□□ -0.53
SDC4-201ENST00000372733 ANKRD17O75179 2603 aaKnown RBP11.75□□□□□ -0.53
SDC4-201ENST00000372733 DSCR9P59020 149 aa11.74□□□□□ -0.53
SDC4-201ENST00000372733 COX7A2LO14548 114 aa11.74□□□□□ -0.53
SDC4-201ENST00000372733 MRPL23Q16540 153 aaKnown RBP11.74□□□□□ -0.53
SDC4-201ENST00000372733 MYO9AB2RTY4 2548 aa11.74□□□□□ -0.53
SDC4-201ENST00000372733 TRGV1A0A0A0MS02 117 aa11.73□□□□□ -0.53
SDC4-201ENST00000372733 J3QLI3 93 aa11.73□□□□□ -0.53
SDC4-201ENST00000372733 MEIG1Q5JSS6 88 aa11.73□□□□□ -0.53
SDC4-201ENST00000372733 PRIMA1Q86XR5 153 aa11.73□□□□□ -0.53
SDC4-201ENST00000372733 PEMTQ9UBM1 199 aa11.73□□□□□ -0.53
SDC4-201ENST00000372733 FBN2P35556 2912 aa11.73□□□□□ -0.53
SDC4-201ENST00000372733 NTM-AS1Q6ZSK4 140 aa11.72□□□□□ -0.53
SDC4-201ENST00000372733 CUBNO60494 3623 aa11.71□□□□□ -0.53
SDC4-201ENST00000372733 FAM208BQ5VWN6 2430 aa11.71□□□□□ -0.54
SDC4-201ENST00000372733 FSHBP01225 129 aa11.71□□□□□ -0.54
SDC4-201ENST00000372733 DEFB114Q30KQ6 69 aa11.71□□□□□ -0.54
SDC4-201ENST00000372733 SHISA2Q6UWI4 295 aa11.71□□□□□ -0.54
SDC4-201ENST00000372733 C2CD3Q4AC94 2353 aa11.7□□□□□ -0.54
SDC4-201ENST00000372733 ODF3L2Q3SX64 289 aa11.7□□□□□ -0.54
SDC4-201ENST00000372733 C1orf158Q8N1D5 194 aa11.7□□□□□ -0.54
SDC4-201ENST00000372733 CHCHD5Q9BSY4 110 aa11.7□□□□□ -0.54
SDC4-201ENST00000372733 TRBV7-7A0A0K0K1E9 115 aa11.69□□□□□ -0.54
SDC4-201ENST00000372733 F5H768 121 aa11.69□□□□□ -0.54
SDC4-201ENST00000372733 Q6ZTI0 123 aa11.69□□□□□ -0.54
SDC4-201ENST00000372733 C4orf3Q8WVX3 66 aa11.69□□□□□ -0.54
SDC4-201ENST00000372733 FAM218AQ96MZ4 157 aa11.69□□□□□ -0.54
SDC4-201ENST00000372733 K7EQD1 137 aa11.68□□□□□ -0.54
SDC4-201ENST00000372733 RPL36AP83881 106 aaKnown RBP11.68□□□□□ -0.54
SDC4-201ENST00000372733 SMCR5Q8TEV8 140 aa11.68□□□□□ -0.54
SDC4-201ENST00000372733 RPL36ALQ969Q0 106 aaKnown RBP11.68□□□□□ -0.54
SDC4-201ENST00000372733 DAZ2Q13117 558 aaKnown RBP11.68□□□□□ -0.54
SDC4-201ENST00000372733 FAM19A3Q7Z5A8 133 aa11.68□□□□□ -0.54
SDC4-201ENST00000372733 DAZ4Q86SG3 579 aaKnown RBP11.68□□□□□ -0.54
SDC4-201ENST00000372733 IL17DQ8TAD2 202 aa11.68□□□□□ -0.54
SDC4-201ENST00000372733 DAZ3Q9NR90 486 aaKnown RBP11.68□□□□□ -0.54
SDC4-201ENST00000372733 EPG5Q9HCE0 2579 aa11.68□□□□□ -0.54
SDC4-201ENST00000372733 USP24Q9UPU5 2620 aa11.67□□□□□ -0.54
SDC4-201ENST00000372733 Q96MF0 132 aa11.67□□□□□ -0.54
SDC4-201ENST00000372733 ZNF462Q96JM2 2506 aa11.67□□□□□ -0.54
SDC4-201ENST00000372733 CDC42SE2Q9NRR3 84 aa11.67□□□□□ -0.54
SDC4-201ENST00000372733 IGHV4-31P0DP07 118 aa11.66□□□□□ -0.54
SDC4-201ENST00000372733 CHD6Q8TD26 2715 aa11.66□□□□□ -0.54
SDC4-201ENST00000372733 STHQ8IWL8 128 aa11.66□□□□□ -0.54
SDC4-201ENST00000372733 COPS9Q8WXC6 57 aa11.66□□□□□ -0.54
SDC4-201ENST00000372733 LRRK2Q5S007 2527 aa11.65□□□□□ -0.54
SDC4-201ENST00000372733 CSDC2Q9Y534 153 aaKnown RBP11.65□□□□□ -0.54
SDC4-201ENST00000372733 NOTCH3Q9UM47 2321 aa11.65□□□□□ -0.54
SDC4-201ENST00000372733 FAM236AA0A1B0GUQ0 79 aa11.65□□□□□ -0.54
SDC4-201ENST00000372733 FAM236BA0A1B0GV22 79 aa11.65□□□□□ -0.54
SDC4-201ENST00000372733 BAALC-AS2P0C853 105 aa11.65□□□□□ -0.54
SDC4-201ENST00000372733 C22orf24Q9Y442 160 aa11.65□□□□□ -0.54
SDC4-201ENST00000372733 TRACP01848 142 aa11.64□□□□□ -0.55
SDC4-201ENST00000372733 C3orf56Q8N813 242 aa11.64□□□□□ -0.55
SDC4-201ENST00000372733 PRB1P04280 392 aa11.64□□□□□ -0.55
SDC4-201ENST00000372733 WNK1Q9H4A3 2382 aa11.64□□□□□ -0.55
SDC4-201ENST00000372733 TRBV10-1A0A0K0K1A3 114 aa11.63□□□□□ -0.55
SDC4-201ENST00000372733 ACYP1P07311 99 aa11.63□□□□□ -0.55
SDC4-201ENST00000372733 HERV-K104P63124 156 aa11.63□□□□□ -0.55
SDC4-201ENST00000372733 Q9HAA7 133 aa11.63□□□□□ -0.55
SDC4-201ENST00000372733 TEX15Q9BXT5 2789 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 148.8 ms