RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 RPL28P46779 137 aaKnown RBP11.59□□□□□ -0.55
NUCKS1-201ENST00000367142 TRBV6-5A0A0K0K1A5 114 aa11.59□□□□□ -0.55
NUCKS1-201ENST00000367142 TMEM131Q92545 1883 aa11.59□□□□□ -0.55
NUCKS1-201ENST00000367142 COX17Q14061 63 aa11.58□□□□□ -0.55
NUCKS1-201ENST00000367142 UQCRQO14949 82 aa11.58□□□□□ -0.56
NUCKS1-201ENST00000367142 C10orf25Q5T742 122 aa11.58□□□□□ -0.56
NUCKS1-201ENST00000367142 TRBV30A0A0K0K1B3 111 aa11.58□□□□□ -0.56
NUCKS1-201ENST00000367142 TIMM17BO60830 172 aa11.58□□□□□ -0.56
NUCKS1-201ENST00000367142 WFDC10AQ9H1F0 79 aa11.58□□□□□ -0.56
NUCKS1-201ENST00000367142 Q6ZQY7 126 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 LINC00526Q96FQ7 95 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 FSHBP01225 129 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 ATP5EP56381 51 aaPredicted RBP11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 ANAPC1Q9H1A4 1944 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 TRIAP1O43715 76 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 NDUFA7O95182 113 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 LOC100131303A0A0U1RQF7 123 aa11.57□□□□□ -0.56
NUCKS1-201ENST00000367142 MRGPRG-AS1Q2M3A8 158 aa11.56□□□□□ -0.56
NUCKS1-201ENST00000367142 MUC7Q8TAX7 377 aa11.56□□□□□ -0.56
NUCKS1-201ENST00000367142 TRBV27A0A0K0K1C4 114 aa11.56□□□□□ -0.56
NUCKS1-201ENST00000367142 C1orf229Q6ZS94 237 aaPredicted RBP11.56□□□□□ -0.56
NUCKS1-201ENST00000367142 IGHV4-30-4P0DP06 118 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 C18orf65Q6ZTR6 163 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 GTF3C1Q12789 2109 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 ZNF73O43830 326 aaPredicted RBP11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 C22orf34Q6ZV56 151 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 Q6ZVQ6 151 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 TSHBP01222 138 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 FAM19A3Q7Z5A8 133 aa11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 SPTAN1Q13813 2472 aaKnown RBP11.55□□□□□ -0.56
NUCKS1-201ENST00000367142 IGLV5-52A0A0A0MRZ9 124 aa11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 BRWD1-AS2P59051 145 aa11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 OXLD1Q5BKU9 147 aa11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 NDUFV3P56181 108 aaKnown RBP11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 U3KQK5 164 aa11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 NDUFC1O43677 76 aa11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 MRPS36P82909 103 aaKnown RBP11.54□□□□□ -0.56
NUCKS1-201ENST00000367142 RNF185Q96GF1 192 aa11.53□□□□□ -0.56
NUCKS1-201ENST00000367142 DYSFO75923 2080 aa11.53□□□□□ -0.56
NUCKS1-201ENST00000367142 M0QXV9 152 aa11.53□□□□□ -0.56
NUCKS1-201ENST00000367142 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.52□□□□□ -0.56
NUCKS1-201ENST00000367142 IGLV1-40P01703 118 aa11.52□□□□□ -0.57
NUCKS1-201ENST00000367142 Q8N6K4 173 aa11.52□□□□□ -0.57
NUCKS1-201ENST00000367142 RNASE8Q8TDE3 154 aaKnown RBP11.52□□□□□ -0.57
NUCKS1-201ENST00000367142 MED13Q9UHV7 2174 aa11.52□□□□□ -0.57
NUCKS1-201ENST00000367142 EIF4EBP1Q13541 118 aaPredicted RBP11.51□□□□□ -0.57
NUCKS1-201ENST00000367142 Q8IZM0 81 aa11.51□□□□□ -0.57
NUCKS1-201ENST00000367142 CRIP1P50238 77 aa11.5□□□□□ -0.57
NUCKS1-201ENST00000367142 ZGRF1Q86YA3 2104 aa11.49□□□□□ -0.57
NUCKS1-201ENST00000367142 A8MZ25 164 aa11.49□□□□□ -0.57
NUCKS1-201ENST00000367142 CIRBP-AS1Q8TBR5 109 aa11.49□□□□□ -0.57
NUCKS1-201ENST00000367142 RNASE3P12724 160 aaKnown RBP11.49□□□□□ -0.57
NUCKS1-201ENST00000367142 KLLNB2CW77 178 aa11.49□□□□□ -0.57
NUCKS1-201ENST00000367142 A6NED7 52 aa11.48□□□□□ -0.57
NUCKS1-201ENST00000367142 MBD6Q96DN6 1003 aa11.48□□□□□ -0.57
NUCKS1-201ENST00000367142 MT-ATP8P03928 68 aa11.48□□□□□ -0.57
NUCKS1-201ENST00000367142 MAPKAPK5-AS1Q8N8E1 139 aa11.48□□□□□ -0.57
NUCKS1-201ENST00000367142 SMIM11BQ8TCY0 68 aa11.48□□□□□ -0.57
NUCKS1-201ENST00000367142 RETNQ9HD89 108 aa11.48□□□□□ -0.57
NUCKS1-201ENST00000367142 CYSRT1A8MQ03 144 aa11.47□□□□□ -0.57
NUCKS1-201ENST00000367142 REG3GQ6UW15 175 aa11.47□□□□□ -0.57
NUCKS1-201ENST00000367142 CHCHD7Q9BUK0 85 aa11.47□□□□□ -0.57
NUCKS1-201ENST00000367142 LST1O00453 97 aa11.47□□□□□ -0.57
NUCKS1-201ENST00000367142 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.46□□□□□ -0.571e-10■■■■□ 20.8
NUCKS1-201ENST00000367142 SERP2Q8N6R1 65 aa11.46□□□□□ -0.57
NUCKS1-201ENST00000367142 ESRGQ1W209 222 aa11.46□□□□□ -0.58
NUCKS1-201ENST00000367142 FAM30AQ9NZY2 134 aa11.45□□□□□ -0.58
NUCKS1-201ENST00000367142 EGFEM1PQ0D2K5 195 aa11.45□□□□□ -0.58
NUCKS1-201ENST00000367142 SNURFQ9Y675 71 aa11.45□□□□□ -0.58
NUCKS1-201ENST00000367142 NOTCH3Q9UM47 2321 aa11.45□□□□□ -0.58
NUCKS1-201ENST00000367142 PRYO14603 147 aa11.44□□□□□ -0.58
NUCKS1-201ENST00000367142 PRR9Q5T870 116 aa11.44□□□□□ -0.58
NUCKS1-201ENST00000367142 HIVEP2P31629 2446 aa11.44□□□□□ -0.58
NUCKS1-201ENST00000367142 KIF26AQ9ULI4 1882 aaPredicted RBP11.44□□□□□ -0.58
NUCKS1-201ENST00000367142 MRPS12O15235 138 aaKnown RBP11.44□□□□□ -0.58
NUCKS1-201ENST00000367142 ADAMTS9Q9P2N4 1935 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 NOTCH4Q99466 2003 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 NRACQ8N912 160 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 CDC42SE2Q9NRR3 84 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 TP73-AS1Q9UF72 201 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 C1orf134Q5TEV5 83 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 Q6ZS46 218 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 CHD3Q12873 2000 aaKnown RBP11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 SMR3AQ99954 134 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 DENND4AQ7Z401 1863 aa11.43□□□□□ -0.58
NUCKS1-201ENST00000367142 DENND4CQ5VZ89 1909 aa11.42□□□□□ -0.58
NUCKS1-201ENST00000367142 PRR4Q16378 134 aa11.42□□□□□ -0.58
NUCKS1-201ENST00000367142 Q6ZPA2 131 aa11.42□□□□□ -0.58
NUCKS1-201ENST00000367142 IGLV2-11P01706 119 aa11.42□□□□□ -0.58
NUCKS1-201ENST00000367142 CACNA1HO95180 2353 aa11.42□□□□□ -0.58
NUCKS1-201ENST00000367142 C6orf223Q8N319 242 aa11.41□□□□□ -0.58
NUCKS1-201ENST00000367142 ZNF295-AS1Q8N0V1 137 aa11.41□□□□□ -0.58
NUCKS1-201ENST00000367142 C1orf137Q5JT78 98 aa11.41□□□□□ -0.58
NUCKS1-201ENST00000367142 PRM2P04554 102 aa11.4□□□□□ -0.58
NUCKS1-201ENST00000367142 IGHV6-1A0A0B4J1U7 121 aa11.39□□□□□ -0.59
NUCKS1-201ENST00000367142 A0A0U1RQV1 116 aa11.39□□□□□ -0.59
NUCKS1-201ENST00000367142 POLR2KP53803 58 aaKnown RBP11.39□□□□□ -0.59
NUCKS1-201ENST00000367142 LINC01556Q5JQF7 62 aa11.39□□□□□ -0.59
NUCKS1-201ENST00000367142 Q6JHZ5 121 aa11.39□□□□□ -0.59
NUCKS1-201ENST00000367142 X6R8D5 127 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms