RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SH2D6Q7Z4S9 175 aa9.48□□□□□ -0.89
SQSTM1-201ENST00000360718 GTSF1LQ9H1H1 148 aa9.48□□□□□ -0.89
SQSTM1-201ENST00000360718 VCX2Q9H322 139 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 NBEAL2Q6ZNJ1 2754 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 IGHV3-30P01768 117 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 IGHV3-30-5P0DP03 117 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 SMAGPQ0VAQ4 97 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 CSNK1G2-AS1Q8NCQ2 148 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 ATP6V0E2Q8NHE4 81 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 KIR2DL5BQ8NHK3 375 aa9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 TMEM263Q8WUH6 116 aaKnown RBP9.47□□□□□ -0.89
SQSTM1-201ENST00000360718 TRBV20-1A0A075B6N2 111 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 TMEM223A0PJW6 202 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 P0DMU3 169 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 FAM231AP0DMU4 169 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 FAM231CP0DMU5 169 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 PSMB2P49721 201 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 UBE2D3P61077 147 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 UBE2D2P62837 147 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 C11orf72Q8NBR9 251 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 EDA2RQ9HAV5 297 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 NBEAL1Q6ZS30 2694 aa9.46□□□□□ -0.9
SQSTM1-201ENST00000360718 EGFEM1PQ0D2K5 195 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 PIK3CD-AS1Q5SR53 167 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 PTH2Q96A98 100 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 NACAE9PAV3 2078 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 TSPEAR-AS2P59090 65 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 CFAP126Q5VTH2 177 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 C16orf74Q96GX8 76 aa9.45□□□□□ -0.9
SQSTM1-201ENST00000360718 CRYBA4P53673 196 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 C10orf126Q8N4M7 172 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 PRO1854Q9UHT4 67 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 PYGO1Q9Y3Y4 419 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 A8MWV9 139 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 RHODO00212 210 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 CFC1BP0CG36 223 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 CFC1P0CG37 223 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 AMELXQ99217 191 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 MGAM2Q2M2H8 2515 aa9.44□□□□□ -0.9
SQSTM1-201ENST00000360718 DNAH3Q8TD57 4116 aa9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 IGHV4-30-4P0DP06 118 aa9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 MTURNQ8N3F0 131 aa9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 OPRPNQ99935 248 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 IGLV4-3A0A075B6K6 122 aa9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 ZNF22P17026 224 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 TNFRSF18Q9Y5U5 241 aa9.43□□□□□ -0.9
SQSTM1-201ENST00000360718 SCGB1C2P0DMR2 95 aa9.42□□□□□ -0.9
SQSTM1-201ENST00000360718 FOXI1Q12951 378 aa9.42□□□□□ -0.9
SQSTM1-201ENST00000360718 SMIM9A6NGZ8 99 aa9.42□□□□□ -0.9
SQSTM1-201ENST00000360718 TRGV1A0A0A0MS02 117 aa9.41□□□□□ -0.9
SQSTM1-201ENST00000360718 A0A0J9YXV3 536 aa9.41□□□□□ -0.9
SQSTM1-201ENST00000360718 IL17DQ8TAD2 202 aa9.41□□□□□ -0.9
SQSTM1-201ENST00000360718 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.4□□□□□ -0.9
SQSTM1-201ENST00000360718 DAZ2Q13117 558 aaKnown RBP9.4□□□□□ -0.9
SQSTM1-201ENST00000360718 SFTA2Q6UW10 78 aa9.4□□□□□ -0.9
SQSTM1-201ENST00000360718 DEFB135Q30KP9 77 aa9.4□□□□□ -0.9
SQSTM1-201ENST00000360718 NOP10Q9NPE3 64 aaKnown RBP9.4□□□□□ -0.9
SQSTM1-201ENST00000360718 A0A0B4J2C4 111 aa9.39□□□□□ -0.91
SQSTM1-201ENST00000360718 A4D1N5 150 aa9.39□□□□□ -0.91
SQSTM1-201ENST00000360718 SMCPP49901 116 aaPredicted RBP9.39□□□□□ -0.91
SQSTM1-201ENST00000360718 TCL1BO95988 128 aa9.39□□□□□ -0.91
SQSTM1-201ENST00000360718 TIMM21Q9BVV7 248 aa9.39□□□□□ -0.91
SQSTM1-201ENST00000360718 ERG28Q9UKR5 140 aa9.39□□□□□ -0.91
SQSTM1-201ENST00000360718 IGHV3-73A0A0B4J1V6 119 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 A8MZ25 164 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 MRPS36P82909 103 aaKnown RBP9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 MUSTN1Q8IVN3 82 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 PPDPFLQ8WWR9 84 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 DNAJC30Q96LL9 226 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 SPANXA1Q9NS26 97 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 IGHV3-64A0A075B6Q5 118 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 PLAC8L1A1L4L8 177 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 RS1O15537 224 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 CKS1BP61024 79 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 Q6ZTI0 123 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 TEN1Q86WV5 123 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 SBSPONQ8IVN8 264 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 OVOL2Q9BRP0 275 aa9.38□□□□□ -0.91
SQSTM1-201ENST00000360718 X6R8D5 127 aa9.37□□□□□ -0.91
SQSTM1-201ENST00000360718 A0A0J9YXY3 114 aa9.36□□□□□ -0.91
SQSTM1-201ENST00000360718 IGHV3-33P01772 117 aa9.36□□□□□ -0.91
SQSTM1-201ENST00000360718 PRB2P02812 416 aaPredicted RBP9.36□□□□□ -0.91
SQSTM1-201ENST00000360718 IGHV3-30-3P0DP02 117 aa9.36□□□□□ -0.91
SQSTM1-201ENST00000360718 TRGV2A0A075B6R0 118 aa9.36□□□□□ -0.91
SQSTM1-201ENST00000360718 TRAV4A0A0B4J268 109 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 IGHV1-58A0A0C4DH39 117 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 TINCRA0A1B0GVN0 87 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 RNF183Q96D59 192 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 M0QXV9 152 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 GAGE7O76087 117 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 GAGE12FP0CL80 117 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 GAGE12GP0CL81 117 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 GAGE12IP0CL82 117 aa9.35□□□□□ -0.91
SQSTM1-201ENST00000360718 MIFP14174 115 aa9.34□□□□□ -0.91
SQSTM1-201ENST00000360718 DNHD1Q96M86 4753 aa9.34□□□□□ -0.91
SQSTM1-201ENST00000360718 IGHV3-53P01767 116 aa9.34□□□□□ -0.91
SQSTM1-201ENST00000360718 Q1RN00 199 aa9.34□□□□□ -0.91
SQSTM1-201ENST00000360718 UBE2D4Q9Y2X8 147 aa9.34□□□□□ -0.91
SQSTM1-201ENST00000360718 CHCHD7Q9BUK0 85 aa9.33□□□□□ -0.92
SQSTM1-201ENST00000360718 FAM104AQ969W3 186 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms