RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ODF1Q14990 250 aa11.61□□□□□ -0.55
PTPRF-201ENST00000359947 TRBV6-8A0A0A6YYG3 113 aa11.61□□□□□ -0.55
PTPRF-201ENST00000359947 PSMG3-AS1Q96PY0 264 aa11.61□□□□□ -0.55
PTPRF-201ENST00000359947 WFDC2Q14508 124 aa11.6□□□□□ -0.55
PTPRF-201ENST00000359947 RAI1Q7Z5J4 1906 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-201ENST00000359947 BRK1Q8WUW1 75 aa11.6□□□□□ -0.55
PTPRF-201ENST00000359947 JMJD7-PLA2G4BH0Y9G9 81 aa11.6□□□□□ -0.55
PTPRF-201ENST00000359947 SLPIP03973 132 aa11.59□□□□□ -0.55
PTPRF-201ENST00000359947 WDR87Q6ZQQ6 2873 aa11.59□□□□□ -0.55
PTPRF-201ENST00000359947 KIR2DL5BQ8NHK3 375 aa11.59□□□□□ -0.55
PTPRF-201ENST00000359947 C19orf71A6NCJ1 209 aa11.59□□□□□ -0.55
PTPRF-201ENST00000359947 CDKN2A-AS1Q9UH64 79 aa11.59□□□□□ -0.55
PTPRF-201ENST00000359947 RETNQ9HD89 108 aa11.58□□□□□ -0.55
PTPRF-201ENST00000359947 LY6LH3BQJ8 138 aa11.58□□□□□ -0.56
PTPRF-201ENST00000359947 BRWD1-AS2P59051 145 aa11.58□□□□□ -0.56
PTPRF-201ENST00000359947 SYCNQ0VAF6 134 aa11.58□□□□□ -0.56
PTPRF-201ENST00000359947 SCXQ7RTU7 201 aa11.58□□□□□ -0.56
PTPRF-201ENST00000359947 TET2Q6N021 2002 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-201ENST00000359947 ODF3Q96PU9 254 aa11.57□□□□□ -0.56
PTPRF-201ENST00000359947 PIK3CD-AS1Q5SR53 167 aa11.57□□□□□ -0.56
PTPRF-201ENST00000359947 RPL37AP8A6NKH3 93 aa11.57□□□□□ -0.56
PTPRF-201ENST00000359947 PIEZO1Q92508 2521 aa11.57□□□□□ -0.56
PTPRF-201ENST00000359947 MIAQ16674 131 aa11.57□□□□□ -0.56
PTPRF-201ENST00000359947 SPTSSBQ8NFR3 76 aa11.57□□□□□ -0.56
PTPRF-201ENST00000359947 UBE2D3P61077 147 aa11.56□□□□□ -0.56
PTPRF-201ENST00000359947 IGHV4-30-4P0DP06 118 aa11.56□□□□□ -0.56
PTPRF-201ENST00000359947 WFDC10BQ8IUB3 73 aa11.56□□□□□ -0.56
PTPRF-201ENST00000359947 ZFAND3Q9H8U3 227 aa11.56□□□□□ -0.56
PTPRF-201ENST00000359947 LINC00574Q9H8X3 128 aa11.56□□□□□ -0.56
PTPRF-201ENST00000359947 J3KT08 172 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 A0A0J9YXY3 114 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 BPY2O14599 106 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 Q6ZPA2 131 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 TEN1Q86WV5 123 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 IGLV9-49A0A0B4J1Y8 123 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 CRYGBP07316 175 aa11.55□□□□□ -0.56
PTPRF-201ENST00000359947 BRI3O95415 125 aa11.54□□□□□ -0.56
PTPRF-201ENST00000359947 AVPP01185 164 aa11.54□□□□□ -0.56
PTPRF-201ENST00000359947 C1orf158Q8N1D5 194 aa11.53□□□□□ -0.56
PTPRF-201ENST00000359947 PTH2Q96A98 100 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 ZFYVE26Q68DK2 2539 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 KIR2DL5BA0A0G2JN68 375 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 KIR2DL5BA0A0G2JPC4 375 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 TRBV6-4A0A1B0GX49 114 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 KIR2DL5AQ8N109 375 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 MPLKIPQ8TAP9 179 aa11.52□□□□□ -0.57
PTPRF-201ENST00000359947 TRAV23DV6A0A075B6W5 121 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 A8MZ25 164 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 EBI3Q14213 229 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 IGLV4-3A0A075B6K6 122 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 RBX1P62877 108 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 EML5Q05BV3 1969 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 H7C423 109 aa11.51□□□□□ -0.57
PTPRF-201ENST00000359947 M0QY20 66 aa11.5□□□□□ -0.57
PTPRF-201ENST00000359947 P0C879 139 aa11.5□□□□□ -0.57
PTPRF-201ENST00000359947 EDN2P20800 178 aa11.5□□□□□ -0.57
PTPRF-201ENST00000359947 C3orf84H3BNL1 204 aa11.5□□□□□ -0.57
PTPRF-201ENST00000359947 UPK3BQ9BT76 320 aa11.49□□□□□ -0.57
PTPRF-201ENST00000359947 CRIP1P50238 77 aa11.48□□□□□ -0.57
PTPRF-201ENST00000359947 EP400Q96L91 3159 aa11.48□□□□□ -0.57
PTPRF-201ENST00000359947 JMJD1CQ15652 2540 aa11.48□□□□□ -0.57
PTPRF-201ENST00000359947 IGLC6P0CF74 106 aa11.48□□□□□ -0.57
PTPRF-201ENST00000359947 IGLV2-8P01709 118 aa11.47□□□□□ -0.57
PTPRF-201ENST00000359947 HIGD1BQ9P298 99 aa11.47□□□□□ -0.57
PTPRF-201ENST00000359947 RNASE8Q8TDE3 154 aaKnown RBP11.47□□□□□ -0.57
PTPRF-201ENST00000359947 USP17L23D6RBM5 183 aa11.47□□□□□ -0.57
PTPRF-201ENST00000359947 C2CD3Q4AC94 2353 aa11.47□□□□□ -0.57
PTPRF-201ENST00000359947 NUPR2A6NF83 97 aa11.46□□□□□ -0.57
PTPRF-201ENST00000359947 FSTL3O95633 263 aa11.46□□□□□ -0.57
PTPRF-201ENST00000359947 TCL1BO95988 128 aa11.46□□□□□ -0.57
PTPRF-201ENST00000359947 LELP1Q5T871 98 aa11.46□□□□□ -0.57
PTPRF-201ENST00000359947 PLAC8L1A1L4L8 177 aa11.46□□□□□ -0.58
PTPRF-201ENST00000359947 C6orf99Q4VX62 202 aa11.45□□□□□ -0.58
PTPRF-201ENST00000359947 TEX49A0A1B0GTD5 131 aa11.45□□□□□ -0.58
PTPRF-201ENST00000359947 C11orf1Q9H5F2 150 aa11.45□□□□□ -0.58
PTPRF-201ENST00000359947 TMEM223A0PJW6 202 aa11.45□□□□□ -0.58
PTPRF-201ENST00000359947 ZNF22P17026 224 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-201ENST00000359947 PRR9Q5T870 116 aa11.44□□□□□ -0.58
PTPRF-201ENST00000359947 UBE2D2P62837 147 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 ATG2AQ2TAZ0 1938 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 A0A1B0GXF2 115 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 IBA57-AS1B1ANH7 110 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 TAX1BP3O14907 124 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 COL5A1P20908 1838 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-201ENST00000359947 IGLV4-69A0A075B6H9 119 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 LOC107984640A0A0U1RRK4 108 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 CRIP3Q6Q6R5 217 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 G3V4G9 280 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 PDE6GP18545 87 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 SPANXB1Q9NS25 103 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-201ENST00000359947 EIF4EBP1Q13541 118 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-201ENST00000359947 CD164L2Q6UWJ8 174 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 SDIM1Q6ZPB5 146 aa11.43□□□□□ -0.58
PTPRF-201ENST00000359947 LINC00308Q8TCZ7 52 aa11.42□□□□□ -0.58
PTPRF-201ENST00000359947 LRRK2Q5S007 2527 aa11.42□□□□□ -0.58
PTPRF-201ENST00000359947 COA6Q5JTJ3 125 aaKnown RBP11.42□□□□□ -0.58
PTPRF-201ENST00000359947 CCKP06307 115 aa11.42□□□□□ -0.58
PTPRF-201ENST00000359947 IGLV1-40P01703 118 aa11.42□□□□□ -0.58
PTPRF-201ENST00000359947 MLST8Q9BVC4 326 aa11.41□□□□□ -0.58
PTPRF-201ENST00000359947 A0A0U1RQV1 116 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms