RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 Q8NA96 180 aa14.59□□□□□ -0.07
CCDC88B-202ENST00000356786 PKIGQ9Y2B9 76 aa14.59□□□□□ -0.07
CCDC88B-202ENST00000356786 SCXQ7RTU7 201 aa14.58□□□□□ -0.07
CCDC88B-202ENST00000356786 DEFB4AO15263 64 aa14.58□□□□□ -0.08
CCDC88B-202ENST00000356786 PRO0255Q9UI72 69 aa14.58□□□□□ -0.08
CCDC88B-202ENST00000356786 TRBV6-5A0A0K0K1A5 114 aa14.57□□□□□ -0.08
CCDC88B-202ENST00000356786 A0A0U1RQV1 116 aa14.57□□□□□ -0.08
CCDC88B-202ENST00000356786 TIRAPP58753 221 aa14.57□□□□□ -0.08
CCDC88B-202ENST00000356786 ZMAT4Q9H898 229 aa14.57□□□□□ -0.08
CCDC88B-202ENST00000356786 RNASE3P12724 160 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-202ENST00000356786 PROK1P58294 105 aa14.56□□□□□ -0.08
CCDC88B-202ENST00000356786 COX7CP15954 63 aa14.56□□□□□ -0.08
CCDC88B-202ENST00000356786 LMO4P61968 165 aa14.56□□□□□ -0.08
CCDC88B-202ENST00000356786 LY6LH3BQJ8 138 aa14.55□□□□□ -0.08
CCDC88B-202ENST00000356786 IBA57-AS1B1ANH7 110 aa14.55□□□□□ -0.08
CCDC88B-202ENST00000356786 POLR2KP53803 58 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-202ENST00000356786 NRGNQ92686 78 aa14.55□□□□□ -0.08
CCDC88B-202ENST00000356786 PYGO1Q9Y3Y4 419 aa14.55□□□□□ -0.08
CCDC88B-202ENST00000356786 PRR9Q5T870 116 aa14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 WFDC11Q8NEX6 87 aa14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 H7C423 109 aa14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 FBXL19-AS1Q494R0 122 aa14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 SVIPQ8NHG7 77 aa14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 TLN1Q9Y490 2541 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 EBI3Q14213 229 aa14.54□□□□□ -0.08
CCDC88B-202ENST00000356786 DEFB135Q30KP9 77 aa14.53□□□□□ -0.08
CCDC88B-202ENST00000356786 CNFNQ9BYD5 112 aa14.53□□□□□ -0.08
CCDC88B-202ENST00000356786 PCNTO95613 3336 aa14.53□□□□□ -0.08
CCDC88B-202ENST00000356786 TIMM17BO60830 172 aa14.53□□□□□ -0.08
CCDC88B-202ENST00000356786 TSHBP01222 138 aa14.53□□□□□ -0.08
CCDC88B-202ENST00000356786 CHKB-CPT1BH3BT56 60 aa14.52□□□□□ -0.08
CCDC88B-202ENST00000356786 LRP4O75096 1905 aa14.52□□□□□ -0.08
CCDC88B-202ENST00000356786 LINC00269Q8N2A0 174 aa14.52□□□□□ -0.08
CCDC88B-202ENST00000356786 SPTSSBQ8NFR3 76 aa14.51□□□□□ -0.09
CCDC88B-202ENST00000356786 C6orf99Q4VX62 202 aa14.51□□□□□ -0.09
CCDC88B-202ENST00000356786 NDUFC2-KCTD14E9PQ53 114 aa14.5□□□□□ -0.09
CCDC88B-202ENST00000356786 C9orf66Q5T8R8 295 aa14.5□□□□□ -0.09
CCDC88B-202ENST00000356786 NUP210LQ5VU65 1888 aa14.5□□□□□ -0.09
CCDC88B-202ENST00000356786 C4orf3Q8WVX3 66 aa14.5□□□□□ -0.09
CCDC88B-202ENST00000356786 Q6Q795 121 aa14.5□□□□□ -0.09
CCDC88B-202ENST00000356786 UBE2D1P51668 147 aa14.49□□□□□ -0.09
CCDC88B-202ENST00000356786 FAM240AA0A1B0GVK7 77 aa14.48□□□□□ -0.09
CCDC88B-202ENST00000356786 REG3AQ06141 175 aa14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 DEFB113Q30KQ7 82 aa14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 LINC00694P0DN24 101 aa14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 FAM222AQ5U5X8 452 aa14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 TNFRSF13BO14836 293 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 POM121L12Q8N7R1 296 aa14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 SETD2Q9BYW2 2564 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-202ENST00000356786 SNURFQ9Y675 71 aa14.46□□□□□ -0.09
CCDC88B-202ENST00000356786 CRIP2P52943 208 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-202ENST00000356786 CHCHD10Q8WYQ3 142 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-202ENST00000356786 A0A096LNJ9 63 aa14.46□□□□□ -0.1
CCDC88B-202ENST00000356786 IGIPA6NJ69 53 aa14.46□□□□□ -0.1
CCDC88B-202ENST00000356786 CRYGDP07320 174 aa14.45□□□□□ -0.1
CCDC88B-202ENST00000356786 FSTL3O95633 263 aa14.45□□□□□ -0.1
CCDC88B-202ENST00000356786 CCL18P55774 89 aa14.45□□□□□ -0.1
CCDC88B-202ENST00000356786 J3QKU1 62 aa14.44□□□□□ -0.1
CCDC88B-202ENST00000356786 M0QXV9 152 aa14.44□□□□□ -0.1
CCDC88B-202ENST00000356786 XAGE1AQ9HD64 81 aa14.44□□□□□ -0.1
CCDC88B-202ENST00000356786 LRRC75A-AS1Q8N1F1 130 aa14.43□□□□□ -0.1
CCDC88B-202ENST00000356786 KLLNB2CW77 178 aa14.43□□□□□ -0.1
CCDC88B-202ENST00000356786 H0Y9J4 135 aa14.43□□□□□ -0.1
CCDC88B-202ENST00000356786 UBE2D3P61077 147 aa14.43□□□□□ -0.1
CCDC88B-202ENST00000356786 UBE2D2P62837 147 aa14.43□□□□□ -0.1
CCDC88B-202ENST00000356786 TLN2Q9Y4G6 2542 aa14.43□□□□□ -0.1
CCDC88B-202ENST00000356786 TRBV6-8A0A0A6YYG3 113 aa14.41□□□□□ -0.1
CCDC88B-202ENST00000356786 DEFB114Q30KQ6 69 aa14.41□□□□□ -0.1
CCDC88B-202ENST00000356786 SMIM11BQ8TCY0 68 aa14.41□□□□□ -0.1
CCDC88B-202ENST00000356786 UBE2D4Q9Y2X8 147 aa14.41□□□□□ -0.1
CCDC88B-202ENST00000356786 UBE2AP49459 152 aa14.41□□□□□ -0.1
CCDC88B-202ENST00000356786 CCKP06307 115 aa14.41□□□□□ -0.1
CCDC88B-202ENST00000356786 MRPS36P82909 103 aaKnown RBP14.4□□□□□ -0.1
CCDC88B-202ENST00000356786 Q6ZQY7 126 aa14.4□□□□□ -0.1
CCDC88B-202ENST00000356786 DSCAMO60469 2012 aa14.4□□□□□ -0.1
CCDC88B-202ENST00000356786 CEP295Q9C0D2 2601 aa14.4□□□□□ -0.1
CCDC88B-202ENST00000356786 NDUFC1O43677 76 aa14.39□□□□□ -0.11
CCDC88B-202ENST00000356786 V9GYY9 64 aa14.39□□□□□ -0.11
CCDC88B-202ENST00000356786 USP9XQ93008 2570 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-202ENST00000356786 MRPL55Q7Z7F7 128 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-202ENST00000356786 Q8N6K4 173 aa14.39□□□□□ -0.11
CCDC88B-202ENST00000356786 C10orf99Q6UWK7 81 aa14.38□□□□□ -0.11
CCDC88B-202ENST00000356786 C9orf85Q96MD7 179 aa14.38□□□□□ -0.11
CCDC88B-202ENST00000356786 EML5Q05BV3 1969 aa14.38□□□□□ -0.11
CCDC88B-202ENST00000356786 DCANP1Q8TF63 244 aa14.38□□□□□ -0.11
CCDC88B-202ENST00000356786 ATG2AQ2TAZ0 1938 aa14.37□□□□□ -0.11
CCDC88B-202ENST00000356786 HRCT1Q6UXD1 115 aa14.37□□□□□ -0.11
CCDC88B-202ENST00000356786 TSPEAR-AS2P59090 65 aa14.37□□□□□ -0.11
CCDC88B-202ENST00000356786 FAM19A3Q7Z5A8 133 aa14.37□□□□□ -0.11
CCDC88B-202ENST00000356786 HIGD2AQ9BW72 106 aa14.37□□□□□ -0.11
CCDC88B-202ENST00000356786 Q6JHZ5 121 aa14.36□□□□□ -0.11
CCDC88B-202ENST00000356786 PRM2P04554 102 aa14.36□□□□□ -0.11
CCDC88B-202ENST00000356786 TRBV6-4A0A1B0GX49 114 aa14.36□□□□□ -0.11
CCDC88B-202ENST00000356786 Q6ZSV7 163 aa14.36□□□□□ -0.11
CCDC88B-202ENST00000356786 C1orf158Q8N1D5 194 aa14.36□□□□□ -0.11
CCDC88B-202ENST00000356786 IGLV4-69A0A075B6H9 119 aa14.35□□□□□ -0.11
CCDC88B-202ENST00000356786 F8W735 103 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-202ENST00000356786 C3orf84H3BNL1 204 aa14.35□□□□□ -0.11
CCDC88B-202ENST00000356786 ATP5EP56381 51 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-202ENST00000356786 LINC00526Q96FQ7 95 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms