RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 PPDPFQ9H3Y8 114 aa11.6□□□□□ -0.55
HMGA1-202ENST00000347617 ZANQ9Y493 2812 aa11.6□□□□□ -0.55
HMGA1-202ENST00000347617 CELSR1Q9NYQ6 3014 aa11.6□□□□□ -0.55
HMGA1-202ENST00000347617 TEX15Q9BXT5 2789 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 NDUFA1O15239 70 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 DEFB104AQ8WTQ1 72 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 UBE2E2Q96LR5 201 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 ITPR3Q14573 2671 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 IGKV3-7A0A075B6H7 116 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 TIRAPP58753 221 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 CLEC2BQ92478 149 aa11.59□□□□□ -0.55
HMGA1-202ENST00000347617 COX7A2LO14548 114 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 IGHV3-11P01762 117 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 CXCL5P42830 114 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 TMEM95Q3KNT9 176 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 DUX3Q96PT4 197 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 LINC01587Q99440 93 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 TNFRSF18Q9Y5U5 241 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 GCN1Q92616 2671 aaKnown RBP11.58□□□□□ -0.56
HMGA1-202ENST00000347617 UNC79Q9P2D8 2635 aa11.58□□□□□ -0.56
HMGA1-202ENST00000347617 DNAJC30Q96LL9 226 aa11.57□□□□□ -0.56
HMGA1-202ENST00000347617 IGLV5-45A0A087WSX0 123 aa11.56□□□□□ -0.56
HMGA1-202ENST00000347617 TRAV8-3A0A0A6YYJ7 113 aa11.56□□□□□ -0.56
HMGA1-202ENST00000347617 TRACP01848 142 aa11.56□□□□□ -0.56
HMGA1-202ENST00000347617 FAM104AQ969W3 186 aa11.56□□□□□ -0.56
HMGA1-202ENST00000347617 ADARB2-AS1A8MUL3 147 aa11.56□□□□□ -0.56
HMGA1-202ENST00000347617 K7EQG2 157 aa11.55□□□□□ -0.56
HMGA1-202ENST00000347617 CHCHD5Q9BSY4 110 aa11.55□□□□□ -0.56
HMGA1-202ENST00000347617 CSMD1Q96PZ7 3565 aa11.55□□□□□ -0.56
HMGA1-202ENST00000347617 FAM222AQ5U5X8 452 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 SHISA2Q6UWI4 295 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 SDIM1Q6ZPB5 146 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 DAND5Q8N907 189 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 PEMTQ9UBM1 199 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 UBE2D4Q9Y2X8 147 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 NBPF19A0A087WUL8 3843 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 UQCRQO14949 82 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 C3orf22Q8N5N4 141 aa11.54□□□□□ -0.56
HMGA1-202ENST00000347617 CCDC168Q8NDH2 2452 aa11.53□□□□□ -0.56
HMGA1-202ENST00000347617 FAM236AA0A1B0GUQ0 79 aa11.53□□□□□ -0.56
HMGA1-202ENST00000347617 FAM236BA0A1B0GV22 79 aa11.53□□□□□ -0.56
HMGA1-202ENST00000347617 INAFM2P0DMQ5 153 aa11.53□□□□□ -0.56
HMGA1-202ENST00000347617 MXRA5Q9NR99 2828 aa11.53□□□□□ -0.56
HMGA1-202ENST00000347617 DNAJC9-AS1A6NH13 148 aa11.52□□□□□ -0.57
HMGA1-202ENST00000347617 C10orf99Q6UWK7 81 aa11.52□□□□□ -0.57
HMGA1-202ENST00000347617 CHCHD7Q9BUK0 85 aa11.52□□□□□ -0.57
HMGA1-202ENST00000347617 ITPR2Q14571 2701 aa11.52□□□□□ -0.57
HMGA1-202ENST00000347617 LINC00308Q8TCZ7 52 aa11.51□□□□□ -0.57
HMGA1-202ENST00000347617 CITED2Q99967 270 aaPredicted RBP11.51□□□□□ -0.57
HMGA1-202ENST00000347617 TRAV12-2A0A075B6T6 113 aa11.51□□□□□ -0.57
HMGA1-202ENST00000347617 FAM19A3Q7Z5A8 133 aa11.51□□□□□ -0.57
HMGA1-202ENST00000347617 LINC00526Q96FQ7 95 aa11.51□□□□□ -0.57
HMGA1-202ENST00000347617 RNASE1P07998 156 aaKnown RBP11.5□□□□□ -0.57
HMGA1-202ENST00000347617 HERVK_113P63121 156 aa11.5□□□□□ -0.57
HMGA1-202ENST00000347617 SPINK13Q1W4C9 94 aa11.5□□□□□ -0.57
HMGA1-202ENST00000347617 C9orf153Q5TBE3 101 aa11.5□□□□□ -0.57
HMGA1-202ENST00000347617 Q6ZSV7 163 aa11.5□□□□□ -0.57
HMGA1-202ENST00000347617 OVOL2Q9BRP0 275 aa11.5□□□□□ -0.57
HMGA1-202ENST00000347617 FLNAP21333 2647 aaKnown RBP11.5□□□□□ -0.57
HMGA1-202ENST00000347617 ZFHX3Q15911 3703 aa11.5□□□□□ -0.57
HMGA1-202ENST00000347617 IGLV5-39A0A0G2JS06 123 aa11.49□□□□□ -0.57
HMGA1-202ENST00000347617 ZNF415Q09FC8 603 aa11.49□□□□□ -0.57
HMGA1-202ENST00000347617 C16orf95Q9H693 158 aa11.49□□□□□ -0.57
HMGA1-202ENST00000347617 NDUFA7O95182 113 aa11.49□□□□□ -0.57
HMGA1-202ENST00000347617 PF4P02776 101 aa11.49□□□□□ -0.57
HMGA1-202ENST00000347617 A8MTW9 85 aa11.48□□□□□ -0.57
HMGA1-202ENST00000347617 NPC2P61916 151 aa11.48□□□□□ -0.57
HMGA1-202ENST00000347617 C5orf38Q86SI9 138 aa11.48□□□□□ -0.57
HMGA1-202ENST00000347617 C4orf3Q8WVX3 66 aa11.48□□□□□ -0.57
HMGA1-202ENST00000347617 DUX5Q96PT3 197 aa11.48□□□□□ -0.57
HMGA1-202ENST00000347617 ESM1Q9NQ30 184 aa11.48□□□□□ -0.57
HMGA1-202ENST00000347617 SETXQ7Z333 2677 aaKnown RBP11.48□□□□□ -0.57
HMGA1-202ENST00000347617 A0A1B0GX51 115 aa11.47□□□□□ -0.57
HMGA1-202ENST00000347617 LINC00467Q9BRT7 94 aa11.47□□□□□ -0.57
HMGA1-202ENST00000347617 FLNBO75369 2602 aaKnown RBP11.46□□□□□ -0.58
HMGA1-202ENST00000347617 IGKV3-20P01619 116 aa11.46□□□□□ -0.58
HMGA1-202ENST00000347617 HILS1P60008 231 aa11.46□□□□□ -0.58
HMGA1-202ENST00000347617 CEMP1Q6PRD7 247 aaPredicted RBP11.46□□□□□ -0.58
HMGA1-202ENST00000347617 CDKN2A-AS1Q9UH64 79 aa11.46□□□□□ -0.58
HMGA1-202ENST00000347617 IGHV3-53P01767 116 aa11.45□□□□□ -0.58
HMGA1-202ENST00000347617 BAALC-AS2P0C853 105 aa11.45□□□□□ -0.58
HMGA1-202ENST00000347617 HOXD3P31249 432 aaPredicted RBP11.45□□□□□ -0.58
HMGA1-202ENST00000347617 BEAN1Q3B7T3 259 aa11.45□□□□□ -0.58
HMGA1-202ENST00000347617 ZNF469Q96JG9 3925 aaPredicted RBP11.45□□□□□ -0.58
HMGA1-202ENST00000347617 TLN2Q9Y4G6 2542 aa11.45□□□□□ -0.58
HMGA1-202ENST00000347617 ATOX1O00244 68 aa11.44□□□□□ -0.58
HMGA1-202ENST00000347617 COX7CP15954 63 aa11.44□□□□□ -0.58
HMGA1-202ENST00000347617 DAZ2Q13117 558 aaKnown RBP11.44□□□□□ -0.58
HMGA1-202ENST00000347617 DGAT2L7PQ6IED9 249 aa11.44□□□□□ -0.58
HMGA1-202ENST00000347617 DAZ4Q86SG3 579 aaKnown RBP11.44□□□□□ -0.58
HMGA1-202ENST00000347617 DAZ3Q9NR90 486 aaKnown RBP11.44□□□□□ -0.58
HMGA1-202ENST00000347617 Q9H8V8 135 aa11.44□□□□□ -0.58
HMGA1-202ENST00000347617 A8MZ25 164 aa11.43□□□□□ -0.58
HMGA1-202ENST00000347617 EDN2P20800 178 aa11.43□□□□□ -0.58
HMGA1-202ENST00000347617 SYNJ2BPP57105 145 aa11.43□□□□□ -0.58
HMGA1-202ENST00000347617 RNASE13Q5GAN3 156 aaKnown RBP11.43□□□□□ -0.58
HMGA1-202ENST00000347617 SMCR5Q8TEV8 140 aa11.43□□□□□ -0.58
HMGA1-202ENST00000347617 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.42□□□□□ -0.58
HMGA1-202ENST00000347617 TRAV13-2A0A0B4J235 113 aa11.42□□□□□ -0.58
HMGA1-202ENST00000347617 IGKV2-29A2NJV5 120 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms