RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PKIAP61925 76 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 ANKRD39Q53RE8 183 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 Q6ZTC4 211 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 C14orf144Q96I85 54 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 TIMM17AQ99595 171 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 TM2D3Q9BRN9 247 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 C11orf68Q9H3H3 251 aaKnown RBP2.89□□□□□ -1.95
MCF2-201ENST00000338585 UBE2D4Q9Y2X8 147 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 DNHD1Q96M86 4753 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 TRAV12-1A0A0B4J245 112 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 LINC00587B1AMM8 73 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 TSTD3H0UI37 97 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 G0S2P27469 103 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 NANOS2P60321 138 aaKnown RBP2.88□□□□□ -1.95
MCF2-201ENST00000338585 Q6ZUT4 128 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 TMEM141Q96I45 108 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 SPATA25Q9BR10 227 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 CST9LQ9H4G1 147 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 CHTOPQ9Y3Y2 248 aaKnown RBP2.88□□□□□ -1.95
MCF2-201ENST00000338585 IGLV4-69A0A075B6H9 119 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 F8VRH5 84 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 DPM2O94777 84 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 GHRHP01286 108 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 IGKCP01834 107 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 PMVKQ15126 192 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 ATP6V0E2Q8NHE4 81 aa2.88□□□□□ -1.95
MCF2-201ENST00000338585 IGKV2D-26A0A0A0MRZ7 120 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 TRBV6-8A0A0A6YYG3 113 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 LINC01549A6NIU2 74 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 C11orf86A6NJI1 115 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 IGLC3P0DOY3 106 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 FGF6P10767 208 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 DDTP30046 118 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 GAGE6Q13070 117 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 TMEM243Q9BU79 118 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 GTSF1LQ9H1H1 148 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 SPANXA1Q9NS26 97 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 PYGO1Q9Y3Y4 419 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 HUWE1Q7Z6Z7 4374 aaKnown RBP2.87□□□□□ -1.95
MCF2-201ENST00000338585 TRBV25-1A0A075B6N4 114 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 A0A0J9YXV3 536 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 TEX48A0A1B0GUV7 120 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 HSBP1L1C9JCN9 74 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 C11orf45Q8TAV5 145 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 AMELXQ99217 191 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 TTTY13Q9BZ97 58 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 VCX2Q9H322 139 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 PLNP26678 52 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 DGAT2L7PQ6IED9 249 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 CHCHD5Q9BSY4 110 aa2.87□□□□□ -1.95
MCF2-201ENST00000338585 IGLV4-60A0A075B6I1 120 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 UBE2L6O14933 153 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 NMUP48645 174 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 AMMECR1LQ6DCA0 310 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 MRPL52Q86TS9 123 aaKnown RBP2.86□□□□□ -1.95
MCF2-201ENST00000338585 PCP2Q8IVA1 136 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 MIEN1Q9BRT3 115 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 CHAC1Q9BUX1 264 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 TIMM21Q9BVV7 248 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 DEFB131BA0A096LNP1 70 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 MRPS36P82909 103 aaKnown RBP2.86□□□□□ -1.95
MCF2-201ENST00000338585 MRPL23Q16540 153 aaKnown RBP2.86□□□□□ -1.95
MCF2-201ENST00000338585 TMEM170BQ5T4T1 132 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 OR5A1Q8NGJ0 315 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 CDC42SE2Q9NRR3 84 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 UQCR10Q9UDW1 63 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 ICOSQ9Y6W8 199 aa2.86□□□□□ -1.95
MCF2-201ENST00000338585 IGKV3OR2-268A0A0C4DH90 116 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 COX8AP10176 69 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 ZNF22P17026 224 aaPredicted RBP2.85□□□□□ -1.95
MCF2-201ENST00000338585 MPV17L2Q567V2 206 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 PAPPA-AS1Q5QFB9 102 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 NFE4Q86UQ8 179 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 B9D2Q9BPU9 175 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 CSDC2Q9Y534 153 aaKnown RBP2.85□□□□□ -1.95
MCF2-201ENST00000338585 IGHV3-64A0A075B6Q5 118 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 TRAV13-1A0A0B4J241 112 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 TRAV8-6A0A0B4J262 113 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 TMEM262E9PQX1 116 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 NPSP0C0P6 89 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 UBE2D1P51668 147 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 RBX1P62877 108 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 COX6A2Q02221 97 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 TMEM97Q5BJF2 176 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 SLC25A34Q6PIV7 304 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 MAPKAPK5-AS1Q8N8E1 139 aa2.85□□□□□ -1.95
MCF2-201ENST00000338585 STAB2Q8WWQ8 2551 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 H7C423 109 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 HNRNPA3P51991 378 aaKnown RBP2.84□□□□□ -1.95
MCF2-201ENST00000338585 TSPEAR-AS2P59090 65 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 CTAG1AP78358 180 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 DEFA6Q01524 100 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 KRTAP21-3Q3LHN1 58 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 LINC00242Q5T6M2 205 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 CLPSL2Q6UWE3 100 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 LYPD5Q6UWN5 251 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 C2orf91Q6ZV80 131 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 TMEM101Q96IK0 257 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 C2orf88Q9BSF0 95 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 DNAH9Q9NYC9 4486 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms