RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ODF3BA8MYP8 253 aa9.42□□□□□ -0.9
SDC3-201ENST00000336798 CCKP06307 115 aa9.42□□□□□ -0.9
SDC3-201ENST00000336798 SYCNQ0VAF6 134 aa9.41□□□□□ -0.9
SDC3-201ENST00000336798 PRR15LQ9BU68 103 aa9.41□□□□□ -0.9
SDC3-201ENST00000336798 TRBV6-8A0A0A6YYG3 113 aa9.41□□□□□ -0.9
SDC3-201ENST00000336798 MRPS12O15235 138 aaKnown RBP9.41□□□□□ -0.9
SDC3-201ENST00000336798 C6orf99Q4VX62 202 aa9.41□□□□□ -0.9
SDC3-201ENST00000336798 NUP210Q8TEM1 1887 aaPredicted RBP9.4□□□□□ -0.9
SDC3-201ENST00000336798 K7EQG2 157 aa9.4□□□□□ -0.9
SDC3-201ENST00000336798 SERP2Q8N6R1 65 aa9.4□□□□□ -0.9
SDC3-201ENST00000336798 IGLV4-3A0A075B6K6 122 aa9.4□□□□□ -0.9
SDC3-201ENST00000336798 TMEM223A0PJW6 202 aa9.4□□□□□ -0.91
SDC3-201ENST00000336798 NCOA6Q14686 2063 aaPredicted RBP9.39□□□□□ -0.91
SDC3-201ENST00000336798 YPEL4Q96NS1 127 aa9.39□□□□□ -0.91
SDC3-201ENST00000336798 NANOS2P60321 138 aaKnown RBP9.38□□□□□ -0.91
SDC3-201ENST00000336798 LINC00308Q8TCZ7 52 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 ZFAND3Q9H8U3 227 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 ZNF22P17026 224 aaPredicted RBP9.38□□□□□ -0.91
SDC3-201ENST00000336798 ZNF843Q8N446 348 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 TRAV10A0A0B4J240 114 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 PMAIP1Q13794 54 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 RETNLBQ9BQ08 111 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 ZNF106Q9H2Y7 1883 aaKnown RBP9.38□□□□□ -0.91
SDC3-201ENST00000336798 A6NED7 52 aa9.38□□□□□ -0.91
SDC3-201ENST00000336798 KPRPQ5T749 579 aaPredicted RBP9.38□□□□□ -0.91
SDC3-201ENST00000336798 POM121L12Q8N7R1 296 aa9.37□□□□□ -0.91
SDC3-201ENST00000336798 MIFP14174 115 aa9.37□□□□□ -0.91
SDC3-201ENST00000336798 Q6ZSR3 168 aa9.37□□□□□ -0.91
SDC3-201ENST00000336798 ATP5EP56381 51 aaPredicted RBP9.37□□□□□ -0.91
SDC3-201ENST00000336798 MAPKAPK5-AS1Q8N8E1 139 aa9.37□□□□□ -0.91
SDC3-201ENST00000336798 TRIAP1O43715 76 aa9.37□□□□□ -0.91
SDC3-201ENST00000336798 FAM30AQ9NZY2 134 aa9.37□□□□□ -0.91
SDC3-201ENST00000336798 IGLV2-8P01709 118 aa9.36□□□□□ -0.91
SDC3-201ENST00000336798 UBE2D2P62837 147 aa9.36□□□□□ -0.91
SDC3-201ENST00000336798 TMEM131Q92545 1883 aa9.36□□□□□ -0.91
SDC3-201ENST00000336798 TANC2Q9HCD6 1990 aa9.36□□□□□ -0.91
SDC3-201ENST00000336798 FBXL19-AS1Q494R0 122 aa9.36□□□□□ -0.91
SDC3-201ENST00000336798 PLAC8L1A1L4L8 177 aa9.36□□□□□ -0.91
SDC3-201ENST00000336798 SMIM26A0A096LP01 95 aa9.35□□□□□ -0.91
SDC3-201ENST00000336798 ZFHX2Q9C0A1 2572 aaPredicted RBP9.35□□□□□ -0.91
SDC3-201ENST00000336798 SMR3AQ99954 134 aa9.35□□□□□ -0.91
SDC3-201ENST00000336798 SPRY4Q9C004 299 aa9.35□□□□□ -0.91
SDC3-201ENST00000336798 TRBV6-5A0A0K0K1A5 114 aa9.35□□□□□ -0.91
SDC3-201ENST00000336798 SERP1Q9Y6X1 66 aa9.35□□□□□ -0.91
SDC3-201ENST00000336798 OXLD1Q5BKU9 147 aa9.35□□□□□ -0.91
SDC3-201ENST00000336798 M0QY20 66 aa9.34□□□□□ -0.91
SDC3-201ENST00000336798 SOSTDC1Q6X4U4 206 aa9.34□□□□□ -0.91
SDC3-201ENST00000336798 A0A1B0GXF2 115 aa9.34□□□□□ -0.91
SDC3-201ENST00000336798 IBA57-AS1B1ANH7 110 aa9.34□□□□□ -0.91
SDC3-201ENST00000336798 Q6ZS46 218 aa9.34□□□□□ -0.91
SDC3-201ENST00000336798 PTPRQQ9UMZ3 2332 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 H7C423 109 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 PLXNB3Q9ULL4 1909 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 CRIP1P50238 77 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 BRWD1-AS2P59051 145 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 Q6ZQY7 126 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 ODF3Q96PU9 254 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 FAM208BQ5VWN6 2430 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 C2orf91Q6ZV80 131 aa9.33□□□□□ -0.92
SDC3-201ENST00000336798 CREBBPQ92793 2442 aa9.32□□□□□ -0.92
SDC3-201ENST00000336798 X6R8D5 127 aa9.32□□□□□ -0.92
SDC3-201ENST00000336798 COL4A3Q01955 1670 aa9.32□□□□□ -0.92
SDC3-201ENST00000336798 IMUPQ9GZP8 106 aa9.32□□□□□ -0.92
SDC3-201ENST00000336798 ZNF702PQ9H963 129 aa9.32□□□□□ -0.92
SDC3-201ENST00000336798 TRBV6-4A0A1B0GX49 114 aa9.31□□□□□ -0.92
SDC3-201ENST00000336798 TRBV27A0A0K0K1C4 114 aa9.31□□□□□ -0.92
SDC3-201ENST00000336798 Q6Q795 121 aa9.31□□□□□ -0.92
SDC3-201ENST00000336798 WNK1Q9H4A3 2382 aa9.3□□□□□ -0.92
SDC3-201ENST00000336798 LINC01006Q8NI28 216 aa9.3□□□□□ -0.92
SDC3-201ENST00000336798 CIRBP-AS1Q8TBR5 109 aa9.3□□□□□ -0.92
SDC3-201ENST00000336798 PRO0628Q9UI54 55 aa9.3□□□□□ -0.92
SDC3-201ENST00000336798 Q6ZPA2 131 aa9.3□□□□□ -0.92
SDC3-201ENST00000336798 ZNF706Q9Y5V0 76 aaPredicted RBP9.3□□□□□ -0.92
SDC3-201ENST00000336798 RNF185Q96GF1 192 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 NDUFC1O43677 76 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 MBD6Q96DN6 1003 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 C11orf1Q9H5F2 150 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 IGLV4-69A0A075B6H9 119 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 ATP5EP2Q5VTU8 51 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 LINC00959A0A1B0GUT2 108 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 Q6ZVQ6 151 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 Q8N9L7 120 aa9.29□□□□□ -0.92
SDC3-201ENST00000336798 MUC6Q6W4X9 2439 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 M0R378 163 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 PRR9Q5T870 116 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 MED12LQ86YW9 2145 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 EDN2P20800 178 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 CD164L2Q6UWJ8 174 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 SMIM11BQ8TCY0 68 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 CELA1Q9UNI1 258 aa9.28□□□□□ -0.92
SDC3-201ENST00000336798 KIAA1549Q9HCM3 1950 aa9.27□□□□□ -0.92
SDC3-201ENST00000336798 TSHBP01222 138 aa9.27□□□□□ -0.92
SDC3-201ENST00000336798 HIVEP2P31629 2446 aa9.27□□□□□ -0.93
SDC3-201ENST00000336798 P0C879 139 aa9.27□□□□□ -0.93
SDC3-201ENST00000336798 C4orf26Q17RF5 130 aa9.27□□□□□ -0.93
SDC3-201ENST00000336798 FAM19A3Q7Z5A8 133 aa9.27□□□□□ -0.93
SDC3-201ENST00000336798 C2orf16Q68DN1 1984 aa9.26□□□□□ -0.93
SDC3-201ENST00000336798 BRI3O95415 125 aa9.26□□□□□ -0.93
SDC3-201ENST00000336798 DHRS4-AS1Q9P1J3 65 aa9.26□□□□□ -0.93
SDC3-201ENST00000336798 LELP1Q5T871 98 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms