RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 LTAP01374 205 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 MT1FP04733 61 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 SPRR1BP22528 89 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 MRPS36P82909 103 aaKnown RBP0.85□□□□□ -2.27
LINC00643-201ENST00000334389 ZNF674Q2M3X9 581 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 RPL39P5Q59GN2 51 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 FAM201AQ5SY85 155 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 BVES-AS1Q5T3Y7 98 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 CST9LP1Q5W188 147 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 C10orf99Q6UWK7 81 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 ALKAL2Q6UX46 152 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 SSBP3-AS1Q7Z2R9 100 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 BPIFA4PQ86YQ2 179 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 ARL17AQ8IVW1 177 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 CHCHD1Q96BP2 118 aaKnown RBP0.85□□□□□ -2.27
LINC00643-201ENST00000334389 FXYD5Q96DB9 178 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 AAMDCQ9H7C9 122 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 IL36BQ9NZH7 164 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 HIGD1AQ9Y241 93 aa0.85□□□□□ -2.27
LINC00643-201ENST00000334389 CTXND1A0A1B0GTU2 59 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 SMIM27A0A1W2PRY6 76 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 TMEM235A6NFC5 223 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 F2Z2F3 143 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 M0R129 80 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 HSPB6O14558 160 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 GOSR2O14653 212 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 SLC25A20O43772 301 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 NXPH3O95157 252 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 CXorf1O96002 111 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 COX7A1P24310 79 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 G0S2P27469 103 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 NMUP48645 174 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 ATP5EP56381 51 aaPredicted RBP0.84□□□□□ -2.27
LINC00643-201ENST00000334389 RPL37P61927 97 aaKnown RBP0.84□□□□□ -2.27
LINC00643-201ENST00000334389 KIAA0087Q14695 138 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 RHOHQ15669 191 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 BATFQ16520 125 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 MPV17L2Q567V2 206 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 GCSAMLQ5JQS6 135 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 TOMM5Q8N4H5 51 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 C5orf17Q8NAS9 161 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 ZC2HC1AQ96GY0 325 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 SIGMAR1Q99720 223 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 RHPN1-AS1Q9BWJ2 59 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 SLC25A39Q9BZJ4 359 aaPredicted RBP0.84□□□□□ -2.27
LINC00643-201ENST00000334389 DNAJC4Q9NNZ3 241 aa0.84□□□□□ -2.27
LINC00643-201ENST00000334389 ZNF706Q9Y5V0 76 aaPredicted RBP0.84□□□□□ -2.27
LINC00643-201ENST00000334389 IGLV2-33A0A075B6J2 118 aaPredicted RBP0.84□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV1-24A0A0C4DH33 117 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV7-6A0A0J9YX20 115 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 A0A1W2PRX2 142 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 C19orf71A6NCJ1 209 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 SH2D7A6NKC9 451 aaPredicted RBP0.84□□□□□ -2.28
LINC00643-201ENST00000334389 H0YIZ8 118 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 M0QYG6 137 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 PDE6DO43924 150 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 SSSCA1O60232 199 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 ACTL6BO94805 426 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 NDUFB4O95168 129 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-23P01764 117 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 CD3DP04234 171 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TRGC1P0CF51 173 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 IGLC6P0CF74 106 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 RD3LP0DJH9 198 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 IFITM1P13164 125 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 G6PCP35575 357 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 RPS27P42677 84 aaKnown RBP0.84□□□□□ -2.28
LINC00643-201ENST00000334389 DIAPH2-AS1Q14236 149 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TNXAQ16473 311 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE13Q4V321 117 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 FAM19A1Q7Z5A9 133 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 CBLN2Q8IUK8 224 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 ZFAND2AQ8N6M9 145 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 OR10P1Q8NGE3 313 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 OR2T35Q8NGX2 323 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 THAP6Q8TBB0 222 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TAF15Q92804 592 aaKnown RBP eCLIP0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TMEM18Q96B42 140 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TVP23CQ96ET8 276 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 LINC00167Q96N53 147 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 MGST2Q99735 147 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 SLC25A2Q9BXI2 301 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 PYGO1Q9Y3Y4 419 aa0.84□□□□□ -2.28
LINC00643-201ENST00000334389 TRAV21A0A0B4J279 112 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV10-3A0A0K0K1G6 114 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 GNG7O60262 68 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 COX7A2P2O60397 106 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 APCSP02743 223 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 COX8AP10176 69 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 BCL2P10415 239 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 MGST1P10620 155 aaKnown RBP0.83□□□□□ -2.28
LINC00643-201ENST00000334389 MALP21145 153 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF138P52744 262 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 SUMO1P63165 101 aaKnown RBP0.83□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE2BQ13066 116 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE5Q13069 117 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE6Q13070 117 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE2EQ4V326 116 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE2AQ6NT46 116 aa0.83□□□□□ -2.28
LINC00643-201ENST00000334389 PATE2Q6UY27 113 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms