RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 OR5A1Q8NGJ0 315 aa9.23□□□□□ -0.93
LIMS1-201ENST00000332345 LAMTOR2Q9Y2Q5 125 aa9.23□□□□□ -0.93
LIMS1-201ENST00000332345 KIAA1109Q2LD37 5005 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 IGKV3OR2-268A0A0C4DH90 116 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 NPYP01303 97 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 RHEBQ15382 184 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 KRTAP26-1Q6PEX3 210 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 MRPL52Q86TS9 123 aaKnown RBP9.22□□□□□ -0.93
LIMS1-201ENST00000332345 CLRN3Q8NCR9 226 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 SMIM2Q9BVW6 85 aa9.22□□□□□ -0.93
LIMS1-201ENST00000332345 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.21□□□□□ -0.94
LIMS1-201ENST00000332345 RAB5AP20339 215 aa9.21□□□□□ -0.94
LIMS1-201ENST00000332345 RPS10P5Q9NQ39 176 aa9.21□□□□□ -0.94
LIMS1-201ENST00000332345 USP17L23D6RBM5 183 aa9.2□□□□□ -0.94
LIMS1-201ENST00000332345 KRTAP10-1P60331 282 aa9.2□□□□□ -0.94
LIMS1-201ENST00000332345 NDUFA5Q16718 116 aa9.2□□□□□ -0.94
LIMS1-201ENST00000332345 LCE2CQ5TA81 110 aa9.2□□□□□ -0.94
LIMS1-201ENST00000332345 ZNF664Q8N3J9 261 aa9.2□□□□□ -0.94
LIMS1-201ENST00000332345 CDC42SE2Q9NRR3 84 aa9.2□□□□□ -0.94
LIMS1-201ENST00000332345 CSDC2Q9Y534 153 aaKnown RBP9.2□□□□□ -0.94
LIMS1-201ENST00000332345 PRSS47A8MTI9 375 aa9.19□□□□□ -0.94
LIMS1-201ENST00000332345 MAP1LC3AQ9H492 121 aa9.19□□□□□ -0.94
LIMS1-201ENST00000332345 APOC3P02656 99 aa9.18□□□□□ -0.94
LIMS1-201ENST00000332345 COX19Q49B96 90 aa9.18□□□□□ -0.94
LIMS1-201ENST00000332345 CFAP161Q6P656 301 aa9.18□□□□□ -0.94
LIMS1-201ENST00000332345 CHCHD10Q8WYQ3 142 aaPredicted RBP9.18□□□□□ -0.94
LIMS1-201ENST00000332345 TIMM21Q9BVV7 248 aa9.18□□□□□ -0.94
LIMS1-201ENST00000332345 UBE2D4Q9Y2X8 147 aa9.18□□□□□ -0.94
LIMS1-201ENST00000332345 LOC389332A0A1B0GUA5 103 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 LINC00959A0A1B0GUT2 108 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 GAGE12HA6NDE8 117 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 SNAPINO95295 136 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 SS18Q15532 418 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 SVBPQ8N300 66 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 GNB1LQ9BYB4 327 aa9.17□□□□□ -0.94
LIMS1-201ENST00000332345 CCL25O15444 150 aa9.16□□□□□ -0.94
LIMS1-201ENST00000332345 HERC2O95714 4834 aa9.15□□□□□ -0.94
LIMS1-201ENST00000332345 PRSS1P07477 247 aa9.15□□□□□ -0.94
LIMS1-201ENST00000332345 LCE2AQ5TA79 106 aaPredicted RBP9.15□□□□□ -0.94
LIMS1-201ENST00000332345 Q8N8P6 123 aa9.15□□□□□ -0.94
LIMS1-201ENST00000332345 SPANXA1Q9NS26 97 aa9.15□□□□□ -0.94
LIMS1-201ENST00000332345 RYR1P21817 5038 aa9.15□□□□□ -0.94
LIMS1-201ENST00000332345 hDV102S1A0JD36 115 aa9.14□□□□□ -0.95
LIMS1-201ENST00000332345 C1orf196B1AJZ1 125 aa9.14□□□□□ -0.95
LIMS1-201ENST00000332345 K7EMI3 77 aa9.14□□□□□ -0.95
LIMS1-201ENST00000332345 XCL1P47992 114 aa9.14□□□□□ -0.95
LIMS1-201ENST00000332345 RPL39P62891 51 aaKnown RBP9.14□□□□□ -0.95
LIMS1-201ENST00000332345 KIAA1644Q3SXP7 199 aa9.14□□□□□ -0.95
LIMS1-201ENST00000332345 NXT2Q9NPJ8 142 aaKnown RBP9.14□□□□□ -0.95
LIMS1-201ENST00000332345 AP5S1Q9NUS5 200 aa9.14□□□□□ -0.95
LIMS1-201ENST00000332345 APOBP04114 4563 aaKnown RBP9.13□□□□□ -0.95
LIMS1-201ENST00000332345 MT-ND6P03923 174 aa9.13□□□□□ -0.95
LIMS1-201ENST00000332345 XGP55808 180 aa9.13□□□□□ -0.95
LIMS1-201ENST00000332345 FOXI1Q12951 378 aa9.13□□□□□ -0.95
LIMS1-201ENST00000332345 ORMDL2Q53FV1 153 aa9.13□□□□□ -0.95
LIMS1-201ENST00000332345 HSPG2P98160 4391 aa9.13□□□□□ -0.95
LIMS1-201ENST00000332345 G0S2P27469 103 aa9.12□□□□□ -0.95
LIMS1-201ENST00000332345 MRPS36P82909 103 aaKnown RBP9.12□□□□□ -0.95
LIMS1-201ENST00000332345 CD164L2Q6UWJ8 174 aa9.12□□□□□ -0.95
LIMS1-201ENST00000332345 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-201ENST00000332345 TRAV13-1A0A0B4J241 112 aa9.11□□□□□ -0.95
LIMS1-201ENST00000332345 IFI27P40305 119 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-201ENST00000332345 FABP9Q0Z7S8 132 aa9.11□□□□□ -0.95
LIMS1-201ENST00000332345 LINC01620Q4KN68 170 aa9.11□□□□□ -0.95
LIMS1-201ENST00000332345 RNASE13Q5GAN3 156 aaKnown RBP9.11□□□□□ -0.95
LIMS1-201ENST00000332345 Q6ZUT4 128 aa9.11□□□□□ -0.95
LIMS1-201ENST00000332345 MRPL18Q9H0U6 180 aaKnown RBP9.11□□□□□ -0.95
LIMS1-201ENST00000332345 PYGO1Q9Y3Y4 419 aa9.11□□□□□ -0.95
LIMS1-201ENST00000332345 CNBPP62633 177 aaKnown RBP9.1□□□□□ -0.95
LIMS1-201ENST00000332345 Q8N1X5 172 aa9.1□□□□□ -0.95
LIMS1-201ENST00000332345 C9orf163Q8N9P6 203 aa9.1□□□□□ -0.95
LIMS1-201ENST00000332345 PRSS3P2Q8NHM4 247 aa9.1□□□□□ -0.95
LIMS1-201ENST00000332345 FAM30AQ9NZY2 134 aa9.1□□□□□ -0.95
LIMS1-201ENST00000332345 CYSLTR1Q9Y271 337 aa9.1□□□□□ -0.95
LIMS1-201ENST00000332345 IGHV1-58A0A0C4DH39 117 aa9.09□□□□□ -0.95
LIMS1-201ENST00000332345 Q6ZSA8 131 aa9.09□□□□□ -0.95
LIMS1-201ENST00000332345 C15orf56Q8N910 161 aa9.09□□□□□ -0.95
LIMS1-201ENST00000332345 ALKBH7Q9BT30 221 aaPredicted RBP9.09□□□□□ -0.95
LIMS1-201ENST00000332345 TGIF2-C20orf24A0A0A6YYL0 155 aa9.08□□□□□ -0.96
LIMS1-201ENST00000332345 MALP21145 153 aa9.08□□□□□ -0.96
LIMS1-201ENST00000332345 C2orf66Q6UXQ4 117 aa9.08□□□□□ -0.96
LIMS1-201ENST00000332345 OPRPNQ99935 248 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-201ENST00000332345 TRAPPC1Q9Y5R8 145 aa9.08□□□□□ -0.96
LIMS1-201ENST00000332345 DNAH8Q96JB1 4490 aa9.07□□□□□ -0.96
LIMS1-201ENST00000332345 COX7A2LO14548 114 aa9.07□□□□□ -0.96
LIMS1-201ENST00000332345 HIGD2BQ4VC39 106 aa9.07□□□□□ -0.96
LIMS1-201ENST00000332345 FAM104AQ969W3 186 aa9.07□□□□□ -0.96
LIMS1-201ENST00000332345 TMEM141Q96I45 108 aa9.07□□□□□ -0.96
LIMS1-201ENST00000332345 GVQW2A0A096LPI5 108 aaPredicted RBP9.06□□□□□ -0.96
LIMS1-201ENST00000332345 IFITM10A6NMD0 228 aa9.06□□□□□ -0.96
LIMS1-201ENST00000332345 NPSP0C0P6 89 aa9.06□□□□□ -0.96
LIMS1-201ENST00000332345 Q6ZN92 141 aa9.06□□□□□ -0.96
LIMS1-201ENST00000332345 SLC7A5P1Q8MH63 180 aa9.06□□□□□ -0.96
LIMS1-201ENST00000332345 IGLV4-3A0A075B6K6 122 aa9.05□□□□□ -0.96
LIMS1-201ENST00000332345 IGHV3-64A0A075B6Q5 118 aa9.05□□□□□ -0.96
LIMS1-201ENST00000332345 LINC01549A6NIU2 74 aa9.05□□□□□ -0.96
LIMS1-201ENST00000332345 ZNF561-AS1K7EIQ3 104 aa9.05□□□□□ -0.96
LIMS1-201ENST00000332345 SLPIP03973 132 aa9.05□□□□□ -0.96
LIMS1-201ENST00000332345 PAPPA-AS1Q5QFB9 102 aa9.05□□□□□ -0.96
LIMS1-201ENST00000332345 TEX43Q6ZNM6 134 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms