RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 YPEL4Q96NS1 127 aa10.82□□□□□ -0.68
COL7A1-201ENST00000328333 KLK12Q9UKR0 248 aa10.82□□□□□ -0.68
COL7A1-201ENST00000328333 WT1P19544 449 aaPredicted RBP10.82□□□□□ -0.68
COL7A1-201ENST00000328333 PRSS33Q8NF86 280 aa10.82□□□□□ -0.68
COL7A1-201ENST00000328333 APRG1Q8IVJ8 170 aa10.81□□□□□ -0.68
COL7A1-201ENST00000328333 IGF2-ASQ6U949 168 aa10.81□□□□□ -0.68
COL7A1-201ENST00000328333 CTSZQ9UBR2 303 aa10.81□□□□□ -0.68
COL7A1-201ENST00000328333 C2orf91Q6ZV80 131 aa10.81□□□□□ -0.68
COL7A1-201ENST00000328333 FSTL3O95633 263 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 IGHV4-59P01825 116 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 VPREB1P12018 145 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 TRBV6-5A0A0K0K1A5 114 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 ZNF22P17026 224 aaPredicted RBP10.8□□□□□ -0.68
COL7A1-201ENST00000328333 ZNF524Q96C55 264 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 DEFB136Q30KP8 78 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 Q8N9W7 124 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 MBD6Q96DN6 1003 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 MRPS12O15235 138 aaKnown RBP10.8□□□□□ -0.68
COL7A1-201ENST00000328333 LINC00694P0DN24 101 aa10.8□□□□□ -0.68
COL7A1-201ENST00000328333 IGLV4-3A0A075B6K6 122 aa10.79□□□□□ -0.68
COL7A1-201ENST00000328333 CNFNQ9BYD5 112 aa10.79□□□□□ -0.68
COL7A1-201ENST00000328333 F8W735 103 aaPredicted RBP10.79□□□□□ -0.68
COL7A1-201ENST00000328333 IGLV1-47P01700 117 aa10.79□□□□□ -0.68
COL7A1-201ENST00000328333 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.79□□□□□ -0.68
COL7A1-201ENST00000328333 SNURFQ9Y675 71 aa10.78□□□□□ -0.68
COL7A1-201ENST00000328333 XGP55808 180 aa10.78□□□□□ -0.68
COL7A1-201ENST00000328333 LINC00467Q9BRT7 94 aa10.78□□□□□ -0.68
COL7A1-201ENST00000328333 COL27A1Q8IZC6 1860 aaPredicted RBP10.78□□□□□ -0.68
COL7A1-201ENST00000328333 IGLV2-8P01709 118 aa10.77□□□□□ -0.68
COL7A1-201ENST00000328333 CDKN2A-AS1Q9UH64 79 aa10.77□□□□□ -0.68
COL7A1-201ENST00000328333 M0QY20 66 aa10.77□□□□□ -0.69
COL7A1-201ENST00000328333 RNF185Q96GF1 192 aa10.77□□□□□ -0.69
COL7A1-201ENST00000328333 PRAC2D3DTV9 90 aa10.77□□□□□ -0.69
COL7A1-201ENST00000328333 DEFB112Q30KQ8 113 aa10.77□□□□□ -0.69
COL7A1-201ENST00000328333 RETNQ9HD89 108 aa10.77□□□□□ -0.69
COL7A1-201ENST00000328333 CHCHD10Q8WYQ3 142 aaPredicted RBP10.77□□□□□ -0.69
COL7A1-201ENST00000328333 ODF3L1Q8IXM7 274 aa10.77□□□□□ -0.69
COL7A1-201ENST00000328333 LINC00269Q8N2A0 174 aa10.76□□□□□ -0.69
COL7A1-201ENST00000328333 C9orf85Q96MD7 179 aa10.76□□□□□ -0.69
COL7A1-201ENST00000328333 UBE2D4Q9Y2X8 147 aa10.76□□□□□ -0.69
COL7A1-201ENST00000328333 MYCNOSP40205 109 aa10.76□□□□□ -0.69
COL7A1-201ENST00000328333 PRO0628Q9UI54 55 aa10.76□□□□□ -0.69
COL7A1-201ENST00000328333 SP5Q6BEB4 398 aaPredicted RBP10.75□□□□□ -0.69
COL7A1-201ENST00000328333 IGKV1D-37A0A075B6S9 117 aa10.75□□□□□ -0.69
COL7A1-201ENST00000328333 C1orf158Q8N1D5 194 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 LY6G6EA0A0G2JKS1 128 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 U3KQA8 63 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 MRGPRG-AS1Q2M3A8 158 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 GDF5OSQ5U4N7 250 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 CCDC140Q96MF4 163 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 CLUHP3Q96NS8 147 aa10.74□□□□□ -0.69
COL7A1-201ENST00000328333 RITA1Q96K30 269 aa10.73□□□□□ -0.69
COL7A1-201ENST00000328333 LINC00474Q9P2X8 69 aa10.73□□□□□ -0.69
COL7A1-201ENST00000328333 CD164L2Q6UWJ8 174 aa10.73□□□□□ -0.69
COL7A1-201ENST00000328333 TRBV6-4A0A1B0GX49 114 aa10.73□□□□□ -0.69
COL7A1-201ENST00000328333 C3orf84H3BNL1 204 aa10.72□□□□□ -0.69
COL7A1-201ENST00000328333 DEFB135Q30KP9 77 aa10.72□□□□□ -0.69
COL7A1-201ENST00000328333 PRYO14603 147 aa10.72□□□□□ -0.69
COL7A1-201ENST00000328333 UBE2D3P61077 147 aa10.72□□□□□ -0.69
COL7A1-201ENST00000328333 WFDC10AQ9H1F0 79 aa10.72□□□□□ -0.69
COL7A1-201ENST00000328333 CSDC2Q9Y534 153 aaKnown RBP10.72□□□□□ -0.69
COL7A1-201ENST00000328333 M0R378 163 aa10.72□□□□□ -0.69
COL7A1-201ENST00000328333 IGFL2Q6UWQ7 119 aa10.71□□□□□ -0.69
COL7A1-201ENST00000328333 FAM19A5Q7Z5A7 132 aaPredicted RBP10.71□□□□□ -0.69
COL7A1-201ENST00000328333 TRBV6-8A0A0A6YYG3 113 aa10.71□□□□□ -0.69
COL7A1-201ENST00000328333 HIGD2AQ9BW72 106 aa10.71□□□□□ -0.69
COL7A1-201ENST00000328333 MAP6D1Q9H9H5 199 aa10.71□□□□□ -0.69
COL7A1-201ENST00000328333 COL4A6Q14031 1691 aa10.71□□□□□ -0.7
COL7A1-201ENST00000328333 SMAD5-AS1Q9Y6J3 95 aa10.7□□□□□ -0.7
COL7A1-201ENST00000328333 HRCT1Q6UXD1 115 aa10.7□□□□□ -0.7
COL7A1-201ENST00000328333 LIMD2Q9BT23 127 aa10.7□□□□□ -0.7
COL7A1-201ENST00000328333 ZNF73O43830 326 aaPredicted RBP10.7□□□□□ -0.7
COL7A1-201ENST00000328333 COL4A4P53420 1690 aaPredicted RBP10.7□□□□□ -0.7
COL7A1-201ENST00000328333 C6orf99Q4VX62 202 aa10.7□□□□□ -0.7
COL7A1-201ENST00000328333 PCSK5Q92824 1860 aa10.7□□□□□ -0.7
COL7A1-201ENST00000328333 LOC107984640A0A0U1RRK4 108 aa10.69□□□□□ -0.7
COL7A1-201ENST00000328333 SIRPDQ9H106 197 aa10.69□□□□□ -0.7
COL7A1-201ENST00000328333 SPRY2O43597 315 aa10.69□□□□□ -0.7
COL7A1-201ENST00000328333 CRYGDP07320 174 aa10.69□□□□□ -0.7
COL7A1-201ENST00000328333 IGF1P05019 195 aa10.68□□□□□ -0.7
COL7A1-201ENST00000328333 FRMD6-AS1P0C7T7 363 aa10.68□□□□□ -0.7
COL7A1-201ENST00000328333 IGHV4-38-2P0DP08 117 aa10.68□□□□□ -0.7
COL7A1-201ENST00000328333 EPG5Q9HCE0 2579 aa10.67□□□□□ -0.7
COL7A1-201ENST00000328333 RPL28P46779 137 aaKnown RBP10.67□□□□□ -0.7
COL7A1-201ENST00000328333 ODF3BA8MYP8 253 aa10.67□□□□□ -0.7
COL7A1-201ENST00000328333 Q8N976 141 aa10.67□□□□□ -0.7
COL7A1-201ENST00000328333 LINC01548A6NM66 108 aa10.67□□□□□ -0.7
COL7A1-201ENST00000328333 Q8IZM0 81 aa10.67□□□□□ -0.7
COL7A1-201ENST00000328333 ZNF80P51504 273 aaPredicted RBP10.67□□□□□ -0.7
COL7A1-201ENST00000328333 LINC00322Q6ZN03 302 aaPredicted RBP10.67□□□□□ -0.7
COL7A1-201ENST00000328333 DEFB113Q30KQ7 82 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 NTM-AS1Q6ZSK4 140 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 Q6ZQY7 126 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 MAPK1IP1LQ8NDC0 245 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 NRGNQ92686 78 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 C7orf33Q8WU49 177 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 FAM19A1Q7Z5A9 133 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 PLA2G2CQ5R387 149 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 PRORYQ9H606 182 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 UNQ9165/PRO28630Q6UXU0 137 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 2350.6 ms