RNA–Protein interactions for RNA: ENST00000327304.9

EXOSC3-201, Transcript of exosome component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC3, Length 1,806 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-201ENST00000327304 GAGE5Q13069 117 aa13.13□□□□□ -0.31
EXOSC3-201ENST00000327304 GAGE13Q4V321 117 aa13.13□□□□□ -0.31
EXOSC3-201ENST00000327304 GTSF1LQ9H1H1 148 aa13.13□□□□□ -0.31
EXOSC3-201ENST00000327304 UBE2D4Q9Y2X8 147 aa13.13□□□□□ -0.31
EXOSC3-201ENST00000327304 C2orf88Q9BSF0 95 aa13.12□□□□□ -0.31
EXOSC3-201ENST00000327304 TIMM21Q9BVV7 248 aa13.12□□□□□ -0.31
EXOSC3-201ENST00000327304 VCX2Q9H322 139 aa13.12□□□□□ -0.31
EXOSC3-201ENST00000327304 AMELXQ99217 191 aa13.11□□□□□ -0.31
EXOSC3-201ENST00000327304 OPRPNQ99935 248 aaPredicted RBP13.11□□□□□ -0.31
EXOSC3-201ENST00000327304 IGKV2D-26A0A0A0MRZ7 120 aa13.11□□□□□ -0.31
EXOSC3-201ENST00000327304 SIVA1O15304 175 aa13.11□□□□□ -0.31
EXOSC3-201ENST00000327304 TP73-AS1Q9UF72 201 aa13.11□□□□□ -0.31
EXOSC3-201ENST00000327304 PRO0255Q9UI72 69 aa13.1□□□□□ -0.31
EXOSC3-201ENST00000327304 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 LOC100131303A0A0U1RQF7 123 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 IGKV2-29A2NJV5 120 aaPredicted RBP13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 TCTAP57738 103 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 NFE4Q86UQ8 179 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 FAM104AQ969W3 186 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 TGP01266 2768 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 C11orf86A6NJI1 115 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 LINC00694P0DN24 101 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 NTM-AS1Q6ZSK4 140 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 PCP2Q8IVA1 136 aa13.09□□□□□ -0.31
EXOSC3-201ENST00000327304 TRAV26-1A0A087WT03 109 aa13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 A0A0J9YY99 117 aa13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 E9PLD3 99 aa13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 MRPS36P82909 103 aaKnown RBP13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 SMAGPQ0VAQ4 97 aa13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 C2orf91Q6ZV80 131 aa13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 VSIG2Q96IQ7 327 aa13.08□□□□□ -0.32
EXOSC3-201ENST00000327304 DEFB131BA0A096LNP1 70 aa13.07□□□□□ -0.32
EXOSC3-201ENST00000327304 PAX4O43316 350 aa13.07□□□□□ -0.32
EXOSC3-201ENST00000327304 CSDC2Q9Y534 153 aaKnown RBP13.07□□□□□ -0.32
EXOSC3-201ENST00000327304 TMEM97Q5BJF2 176 aa13.06□□□□□ -0.32
EXOSC3-201ENST00000327304 CEMP1Q6PRD7 247 aaPredicted RBP13.06□□□□□ -0.32
EXOSC3-201ENST00000327304 TRAV10A0A0B4J240 114 aa13.06□□□□□ -0.32
EXOSC3-201ENST00000327304 HERVK_113P61574 105 aa13.06□□□□□ -0.32
EXOSC3-201ENST00000327304 H7C423 109 aa13.05□□□□□ -0.32
EXOSC3-201ENST00000327304 GYPEP15421 78 aa13.05□□□□□ -0.32
EXOSC3-201ENST00000327304 CHAC1Q9BUX1 264 aa13.04□□□□□ -0.32
EXOSC3-201ENST00000327304 TRBV25-1A0A075B6N4 114 aa13.04□□□□□ -0.32
EXOSC3-201ENST00000327304 DGAT2L7PQ6IED9 249 aa13.04□□□□□ -0.32
EXOSC3-201ENST00000327304 TMEM243Q9BU79 118 aa13.04□□□□□ -0.32
EXOSC3-201ENST00000327304 DNAH7Q8WXX0 4024 aa13.03□□□□□ -0.32
EXOSC3-201ENST00000327304 HINT1P49773 126 aaPredicted RBP13.03□□□□□ -0.32
EXOSC3-201ENST00000327304 BATFQ16520 125 aa13.03□□□□□ -0.32
EXOSC3-201ENST00000327304 TMEM170BQ5T4T1 132 aa13.03□□□□□ -0.32
EXOSC3-201ENST00000327304 Q6ZUT4 128 aa13.03□□□□□ -0.32
EXOSC3-201ENST00000327304 HIGD1BQ9P298 99 aa13.03□□□□□ -0.32
EXOSC3-201ENST00000327304 TRAV8-6A0A0B4J262 113 aa13.02□□□□□ -0.33
EXOSC3-201ENST00000327304 A0A0J9YXV3 536 aa13.02□□□□□ -0.33
EXOSC3-201ENST00000327304 MPV17L2Q567V2 206 aa13.02□□□□□ -0.33
EXOSC3-201ENST00000327304 UBE2L6O14933 153 aa13.01□□□□□ -0.33
EXOSC3-201ENST00000327304 COL5A1-AS1Q5SY13 56 aa13.01□□□□□ -0.33
EXOSC3-201ENST00000327304 TTTY13Q9BZ97 58 aa13.01□□□□□ -0.33
EXOSC3-201ENST00000327304 DYNC2H1Q8NCM8 4307 aaKnown RBP13.01□□□□□ -0.33
EXOSC3-201ENST00000327304 TRBV6-8A0A0A6YYG3 113 aa13□□□□□ -0.33
EXOSC3-201ENST00000327304 TINCRA0A1B0GVN0 87 aa13□□□□□ -0.33
EXOSC3-201ENST00000327304 ZNF22P17026 224 aaPredicted RBP13□□□□□ -0.33
EXOSC3-201ENST00000327304 MAPKAPK5-AS1Q8N8E1 139 aa13□□□□□ -0.33
EXOSC3-201ENST00000327304 ATP6V0E2Q8NHE4 81 aa12.99□□□□□ -0.33
EXOSC3-201ENST00000327304 A0A096LPF7 62 aa12.99□□□□□ -0.33
EXOSC3-201ENST00000327304 TMEM223A0PJW6 202 aa12.99□□□□□ -0.33
EXOSC3-201ENST00000327304 ZNF25P17030 456 aaPredicted RBP12.99□□□□□ -0.33
EXOSC3-201ENST00000327304 RNASE13Q5GAN3 156 aaKnown RBP12.99□□□□□ -0.33
EXOSC3-201ENST00000327304 BVES-AS1Q5T3Y7 98 aa12.99□□□□□ -0.33
EXOSC3-201ENST00000327304 MYMXA0A1B0GTQ4 84 aa12.98□□□□□ -0.33
EXOSC3-201ENST00000327304 UBE2D1P51668 147 aa12.98□□□□□ -0.33
EXOSC3-201ENST00000327304 HSD52Q0P140 79 aa12.98□□□□□ -0.33
EXOSC3-201ENST00000327304 ICOSQ9Y6W8 199 aa12.98□□□□□ -0.33
EXOSC3-201ENST00000327304 H3BNG1 76 aa12.97□□□□□ -0.33
EXOSC3-201ENST00000327304 AMMECR1LQ6DCA0 310 aa12.97□□□□□ -0.33
EXOSC3-201ENST00000327304 OR5A1Q8NGJ0 315 aa12.97□□□□□ -0.33
EXOSC3-201ENST00000327304 TMEM101Q96IK0 257 aa12.97□□□□□ -0.33
EXOSC3-201ENST00000327304 CDC42SE2Q9NRR3 84 aa12.97□□□□□ -0.33
EXOSC3-201ENST00000327304 FAM19A3Q7Z5A8 133 aa12.97□□□□□ -0.33
EXOSC3-201ENST00000327304 TIRAPP58753 221 aa12.96□□□□□ -0.33
EXOSC3-201ENST00000327304 MRPL23Q16540 153 aaKnown RBP12.96□□□□□ -0.33
EXOSC3-201ENST00000327304 IGLL5B9A064 214 aa12.95□□□□□ -0.34
EXOSC3-201ENST00000327304 LEPROTO15243 131 aa12.95□□□□□ -0.34
EXOSC3-201ENST00000327304 SEC11AP67812 179 aa12.95□□□□□ -0.34
EXOSC3-201ENST00000327304 A0A1B0GV90 55 aa12.94□□□□□ -0.34
EXOSC3-201ENST00000327304 CSMD3Q7Z407 3707 aa12.93□□□□□ -0.34
EXOSC3-201ENST00000327304 ZNF815PA8K554 130 aa12.93□□□□□ -0.34
EXOSC3-201ENST00000327304 GEMIN7Q9H840 131 aaKnown RBP12.93□□□□□ -0.34
EXOSC3-201ENST00000327304 IGLV5-45A0A087WSX0 123 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 J3QQQ9 107 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 TAL2Q16559 108 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 PLEKHB2Q96CS7 222 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 CHCHD5Q9BSY4 110 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 HERVK_113P63121 156 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 GAGE6Q13070 117 aa12.92□□□□□ -0.34
EXOSC3-201ENST00000327304 LGALS3P17931 250 aaKnown RBP12.91□□□□□ -0.34
EXOSC3-201ENST00000327304 C15orf53Q8NAA6 179 aa12.91□□□□□ -0.34
EXOSC3-201ENST00000327304 NUPR2A6NF83 97 aa12.9□□□□□ -0.34
EXOSC3-201ENST00000327304 TSPEAR-AS2P59090 65 aa12.9□□□□□ -0.34
EXOSC3-201ENST00000327304 LINC00242Q5T6M2 205 aa12.9□□□□□ -0.34
EXOSC3-201ENST00000327304 SH2D6Q7Z4S9 175 aa12.9□□□□□ -0.34
EXOSC3-201ENST00000327304 ORAOV1Q8WV07 137 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms