RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 CHCHD5Q9BSY4 110 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 TRBV10-2A0A0K0K1G8 114 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 LGALS9O00182 355 aa11.38□□□□□ -0.59
SHROOM1-201ENST00000319854 H3BMM0 161 aa11.37□□□□□ -0.59
SHROOM1-201ENST00000319854 H7C423 109 aa11.37□□□□□ -0.59
SHROOM1-201ENST00000319854 VCYO14598 125 aa11.37□□□□□ -0.59
SHROOM1-201ENST00000319854 LEPROTO15243 131 aa11.37□□□□□ -0.59
SHROOM1-201ENST00000319854 UBE2WQ96B02 151 aa11.37□□□□□ -0.59
SHROOM1-201ENST00000319854 Q9UF83 564 aa11.37□□□□□ -0.59
SHROOM1-201ENST00000319854 PPP1R17O96001 155 aa11.36□□□□□ -0.59
SHROOM1-201ENST00000319854 TMEM89A2RUT3 159 aa11.36□□□□□ -0.59
SHROOM1-201ENST00000319854 MED14OSP0DP75 135 aa11.36□□□□□ -0.59
SHROOM1-201ENST00000319854 ZNF22P17026 224 aaPredicted RBP11.36□□□□□ -0.59
SHROOM1-201ENST00000319854 C2orf82Q6UX34 121 aa11.36□□□□□ -0.59
SHROOM1-201ENST00000319854 A0A0J9YXV3 536 aa11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 RBMY1BA6NDE4 496 aaKnown RBP11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 RBMY1EA6NEQ0 496 aaKnown RBP11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 RBMY1DP0C7P1 496 aaKnown RBP11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 DNAJC9-AS1A6NH13 148 aa11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 M0R2P5 195 aa11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 CLEC2BQ92478 149 aa11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 XCL2Q9UBD3 114 aa11.35□□□□□ -0.59
SHROOM1-201ENST00000319854 A0A0J9YXY3 114 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 PPDPFQ9H3Y8 114 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 ESM1Q9NQ30 184 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 TRBV30A0A0K0K1B3 111 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 NPC2P61916 151 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 C9orf85Q96MD7 179 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 ADAMTSL4-AS1Q5T5F5 129 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 LINC01600Q96MT4 127 aa11.34□□□□□ -0.59
SHROOM1-201ENST00000319854 NXPH4O95158 308 aa11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 PRSS2P07478 247 aa11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 RNASE13Q5GAN3 156 aaKnown RBP11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 LINC01587Q99440 93 aa11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 TRBV27A0A0K0K1C4 114 aa11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 LITAFQ99732 161 aa11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 VWFP04275 2813 aa11.33□□□□□ -0.6
SHROOM1-201ENST00000319854 M0QY20 66 aa11.32□□□□□ -0.6
SHROOM1-201ENST00000319854 SPXQ9BT56 116 aa11.32□□□□□ -0.6
SHROOM1-201ENST00000319854 CD28P10747 220 aa11.32□□□□□ -0.6
SHROOM1-201ENST00000319854 PEMTQ9UBM1 199 aa11.32□□□□□ -0.6
SHROOM1-201ENST00000319854 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.32□□□□□ -0.6
SHROOM1-201ENST00000319854 TRAV8-3A0A0A6YYJ7 113 aa11.31□□□□□ -0.6
SHROOM1-201ENST00000319854 CEMP1Q6PRD7 247 aaPredicted RBP11.31□□□□□ -0.6
SHROOM1-201ENST00000319854 MAP6D1Q9H9H5 199 aa11.31□□□□□ -0.6
SHROOM1-201ENST00000319854 ICOSQ9Y6W8 199 aa11.31□□□□□ -0.6
SHROOM1-201ENST00000319854 IGHV3-38A0A0C4DH36 116 aa11.3□□□□□ -0.6
SHROOM1-201ENST00000319854 A8MZ25 164 aa11.3□□□□□ -0.6
SHROOM1-201ENST00000319854 C4orf3Q8WVX3 66 aa11.3□□□□□ -0.6
SHROOM1-201ENST00000319854 IGHV3-30-3P0DP02 117 aa11.3□□□□□ -0.6
SHROOM1-201ENST00000319854 SMR3AQ99954 134 aa11.3□□□□□ -0.6
SHROOM1-201ENST00000319854 CITED2Q99967 270 aaPredicted RBP11.3□□□□□ -0.6
SHROOM1-201ENST00000319854 DEFB114Q30KQ6 69 aa11.29□□□□□ -0.6
SHROOM1-201ENST00000319854 LRRC75A-AS1Q8N1F1 130 aa11.29□□□□□ -0.6
SHROOM1-201ENST00000319854 OTOGQ6ZRI0 2925 aa11.29□□□□□ -0.6
SHROOM1-201ENST00000319854 TRGV11A0A075B6L2 103 aa11.28□□□□□ -0.6
SHROOM1-201ENST00000319854 RNF152Q8N8N0 203 aa11.28□□□□□ -0.6
SHROOM1-201ENST00000319854 Q6ZSN1 163 aa11.28□□□□□ -0.6
SHROOM1-201ENST00000319854 IGLV4-3A0A075B6K6 122 aa11.28□□□□□ -0.6
SHROOM1-201ENST00000319854 WFDC10AQ9H1F0 79 aa11.28□□□□□ -0.6
SHROOM1-201ENST00000319854 TRBV6-5A0A0K0K1A5 114 aa11.27□□□□□ -0.61
SHROOM1-201ENST00000319854 IGHV3-53P01767 116 aa11.27□□□□□ -0.61
SHROOM1-201ENST00000319854 FAM104AQ969W3 186 aa11.27□□□□□ -0.61
SHROOM1-201ENST00000319854 ATRQ13535 2644 aa11.27□□□□□ -0.61
SHROOM1-201ENST00000319854 CCL24O00175 119 aa11.26□□□□□ -0.61
SHROOM1-201ENST00000319854 C20orf203Q8NBC4 194 aa11.26□□□□□ -0.61
SHROOM1-201ENST00000319854 I3L3M4 83 aa11.26□□□□□ -0.61
SHROOM1-201ENST00000319854 Q8N2B8 174 aa11.26□□□□□ -0.61
SHROOM1-201ENST00000319854 NSUN5P1Q3KNT7 163 aa11.25□□□□□ -0.61
SHROOM1-201ENST00000319854 FLNBO75369 2602 aaKnown RBP11.25□□□□□ -0.61
SHROOM1-201ENST00000319854 DAND5Q8N907 189 aa11.25□□□□□ -0.61
SHROOM1-201ENST00000319854 H3BT86 120 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 ODF3L2Q3SX64 289 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 STHQ8IWL8 128 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 LST1O00453 97 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 TIMM21Q9BVV7 248 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 TENM1Q9UKZ4 2725 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 FAM236AA0A1B0GUQ0 79 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 FAM236BA0A1B0GV22 79 aa11.24□□□□□ -0.61
SHROOM1-201ENST00000319854 TRBV7-7A0A0K0K1E9 115 aa11.23□□□□□ -0.61
SHROOM1-201ENST00000319854 DEFB121Q5J5C9 76 aa11.23□□□□□ -0.61
SHROOM1-201ENST00000319854 MRPL23Q16540 153 aaKnown RBP11.23□□□□□ -0.61
SHROOM1-201ENST00000319854 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 IGKV2-29A2NJV5 120 aaPredicted RBP11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 SMCR5Q8TEV8 140 aa11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 NDUFA12Q9UI09 145 aa11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 RPL35AP18077 110 aaKnown RBP11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 RHOHQ15669 191 aa11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 TRGV1A0A0A0MS02 117 aa11.22□□□□□ -0.61
SHROOM1-201ENST00000319854 FAM240AA0A1B0GVK7 77 aa11.21□□□□□ -0.61
SHROOM1-201ENST00000319854 COX6CP09669 75 aa11.21□□□□□ -0.61
SHROOM1-201ENST00000319854 ZNF415Q09FC8 603 aa11.21□□□□□ -0.61
SHROOM1-201ENST00000319854 LINC01006Q8NI28 216 aa11.21□□□□□ -0.61
SHROOM1-201ENST00000319854 INSP01308 110 aa11.21□□□□□ -0.62
SHROOM1-201ENST00000319854 LINC00694P0DN24 101 aa11.2□□□□□ -0.62
SHROOM1-201ENST00000319854 MIAQ16674 131 aa11.2□□□□□ -0.62
SHROOM1-201ENST00000319854 SPANXDQ9BXN6 97 aa11.2□□□□□ -0.62
SHROOM1-201ENST00000319854 SPANXCQ9NY87 97 aa11.2□□□□□ -0.62
SHROOM1-201ENST00000319854 PLA2G2AP14555 144 aa11.19□□□□□ -0.62
SHROOM1-201ENST00000319854 ANK3Q12955 4377 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms