RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 POM121L12Q8N7R1 296 aa10.72□□□□□ -0.69
PTPN9-201ENST00000306726 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.72□□□□□ -0.69
PTPN9-201ENST00000306726 SRSF2Q01130 221 aaKnown RBP10.72□□□□□ -0.69
PTPN9-201ENST00000306726 TRBV7-9A0A0J9YWB2 115 aa10.72□□□□□ -0.69
PTPN9-201ENST00000306726 UBE2L6O14933 153 aa10.72□□□□□ -0.69
PTPN9-201ENST00000306726 IGHG2P01859 326 aa10.72□□□□□ -0.69
PTPN9-201ENST00000306726 LINC00158P58513 81 aa10.72□□□□□ -0.69
PTPN9-201ENST00000306726 U3KQE9 123 aa10.72□□□□□ -0.69
PTPN9-201ENST00000306726 LINC00315P59091 139 aa10.71□□□□□ -0.69
PTPN9-201ENST00000306726 TMEM61Q8N0U2 210 aa10.71□□□□□ -0.69
PTPN9-201ENST00000306726 LENEPQ9Y5L5 61 aa10.71□□□□□ -0.69
PTPN9-201ENST00000306726 IFITM1P13164 125 aa10.71□□□□□ -0.69
PTPN9-201ENST00000306726 ESM1Q9NQ30 184 aa10.71□□□□□ -0.69
PTPN9-201ENST00000306726 TENM4Q6N022 2769 aa10.71□□□□□ -0.7
PTPN9-201ENST00000306726 TMEM223A0PJW6 202 aa10.71□□□□□ -0.7
PTPN9-201ENST00000306726 DCANP1Q8TF63 244 aa10.7□□□□□ -0.7
PTPN9-201ENST00000306726 TIMM17AQ99595 171 aa10.7□□□□□ -0.7
PTPN9-201ENST00000306726 TINCRA0A1B0GVN0 87 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 GAGE7O76087 117 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 GAGE12FP0CL80 117 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 GAGE12GP0CL81 117 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 GAGE12IP0CL82 117 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 TRGV11A0A075B6L2 103 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 IGHV4-4A0A075B6R2 117 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 FSHBP01225 129 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 DEFB130BP0DP73 79 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 DEFB130AP0DP74 79 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 UBE2D3P61077 147 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 UBE2D2P62837 147 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 GAGE6Q13070 117 aa10.69□□□□□ -0.7
PTPN9-201ENST00000306726 MRPL23Q16540 153 aaKnown RBP10.69□□□□□ -0.7
PTPN9-201ENST00000306726 ATP5G1P05496 136 aa10.68□□□□□ -0.7
PTPN9-201ENST00000306726 SOCS3O14543 225 aa10.68□□□□□ -0.7
PTPN9-201ENST00000306726 KIF25-AS1Q9Y6Z4 181 aa10.68□□□□□ -0.7
PTPN9-201ENST00000306726 WFDC10AQ9H1F0 79 aa10.68□□□□□ -0.7
PTPN9-201ENST00000306726 C5orf38Q86SI9 138 aa10.67□□□□□ -0.7
PTPN9-201ENST00000306726 STHQ8IWL8 128 aa10.67□□□□□ -0.7
PTPN9-201ENST00000306726 RBMY1A1P0DJD3 496 aaKnown RBP10.67□□□□□ -0.7
PTPN9-201ENST00000306726 RBMY1CP0DJD4 496 aa10.67□□□□□ -0.7
PTPN9-201ENST00000306726 RBMY1FQ15415 496 aaKnown RBP10.67□□□□□ -0.7
PTPN9-201ENST00000306726 TMEM263Q8WUH6 116 aaKnown RBP10.67□□□□□ -0.7
PTPN9-201ENST00000306726 TRBV27A0A0K0K1C4 114 aa10.67□□□□□ -0.7
PTPN9-201ENST00000306726 FAM236AA0A1B0GUQ0 79 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 FAM236BA0A1B0GV22 79 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 KLLNB2CW77 178 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 NDUFV3P56181 108 aaKnown RBP10.66□□□□□ -0.7
PTPN9-201ENST00000306726 NOP10Q9NPE3 64 aaKnown RBP10.66□□□□□ -0.7
PTPN9-201ENST00000306726 PAX4O43316 350 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 TMEM86BQ8N661 226 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 LGALS9O00182 355 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 DNAL4O96015 105 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 SCGB1A1P11684 91 aa10.66□□□□□ -0.7
PTPN9-201ENST00000306726 YAE1D1Q9NRH1 226 aa10.65□□□□□ -0.7
PTPN9-201ENST00000306726 IGKV3D-7A0A0C4DH55 119 aa10.65□□□□□ -0.7
PTPN9-201ENST00000306726 A6NDX4 124 aa10.65□□□□□ -0.7
PTPN9-201ENST00000306726 ATRQ13535 2644 aa10.65□□□□□ -0.7
PTPN9-201ENST00000306726 COX6A2Q02221 97 aa10.65□□□□□ -0.7
PTPN9-201ENST00000306726 FLNBO75369 2602 aaKnown RBP10.64□□□□□ -0.71
PTPN9-201ENST00000306726 SLPIP03973 132 aa10.64□□□□□ -0.71
PTPN9-201ENST00000306726 EDA2RQ9HAV5 297 aa10.64□□□□□ -0.71
PTPN9-201ENST00000306726 CR1P17927 2039 aa10.64□□□□□ -0.71
PTPN9-201ENST00000306726 LOC100131303A0A0U1RQF7 123 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 H7C423 109 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 LINC00694P0DN24 101 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 HTN3P15516 51 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 HERV-K104P63124 156 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 ZNF415Q09FC8 603 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 Q6ZTI0 123 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 IGHV1-58A0A0C4DH39 117 aa10.63□□□□□ -0.71
PTPN9-201ENST00000306726 TRBV10-2A0A0K0K1G8 114 aa10.62□□□□□ -0.71
PTPN9-201ENST00000306726 K7EQG2 157 aa10.62□□□□□ -0.71
PTPN9-201ENST00000306726 TRGV4A0A0C4DH28 118 aa10.62□□□□□ -0.71
PTPN9-201ENST00000306726 BAALC-AS2P0C853 105 aa10.62□□□□□ -0.71
PTPN9-201ENST00000306726 RHOHQ15669 191 aa10.62□□□□□ -0.71
PTPN9-201ENST00000306726 UNC79Q9P2D8 2635 aa10.62□□□□□ -0.71
PTPN9-201ENST00000306726 HIST1H4AP62805 103 aaKnown RBP10.61□□□□□ -0.71
PTPN9-201ENST00000306726 NSUN5P1Q3KNT7 163 aa10.61□□□□□ -0.71
PTPN9-201ENST00000306726 LINC01546A6NGU7 62 aa10.61□□□□□ -0.71
PTPN9-201ENST00000306726 DEFB4AO15263 64 aa10.61□□□□□ -0.71
PTPN9-201ENST00000306726 APCP25054 2843 aa10.61□□□□□ -0.71
PTPN9-201ENST00000306726 KRTAP1-1Q07627 177 aa10.6□□□□□ -0.71
PTPN9-201ENST00000306726 IGLV10-54A0A075B6I4 117 aa10.6□□□□□ -0.71
PTPN9-201ENST00000306726 Q8N2B8 174 aa10.6□□□□□ -0.71
PTPN9-201ENST00000306726 VSIG2Q96IQ7 327 aa10.6□□□□□ -0.71
PTPN9-201ENST00000306726 ATP6V0E2Q8NHE4 81 aa10.59□□□□□ -0.71
PTPN9-201ENST00000306726 TMEM101Q96IK0 257 aa10.59□□□□□ -0.71
PTPN9-201ENST00000306726 RPL36AP83881 106 aaKnown RBP10.59□□□□□ -0.71
PTPN9-201ENST00000306726 RPL36ALQ969Q0 106 aaKnown RBP10.59□□□□□ -0.71
PTPN9-201ENST00000306726 KLK5Q9Y337 293 aaPredicted RBP10.59□□□□□ -0.71
PTPN9-201ENST00000306726 XCL1P47992 114 aa10.58□□□□□ -0.72
PTPN9-201ENST00000306726 Q6YL49 198 aa10.58□□□□□ -0.72
PTPN9-201ENST00000306726 C9orf153Q5TBE3 101 aa10.58□□□□□ -0.72
PTPN9-201ENST00000306726 C9orf85Q96MD7 179 aa10.58□□□□□ -0.72
PTPN9-201ENST00000306726 MIAQ16674 131 aa10.58□□□□□ -0.72
PTPN9-201ENST00000306726 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.58□□□□□ -0.72
PTPN9-201ENST00000306726 AMELXQ99217 191 aa10.58□□□□□ -0.72
PTPN9-201ENST00000306726 LY6G6DO95868 133 aa10.57□□□□□ -0.72
PTPN9-201ENST00000306726 INSP01308 110 aa10.57□□□□□ -0.72
PTPN9-201ENST00000306726 CRPP02741 224 aa10.57□□□□□ -0.72
PTPN9-201ENST00000306726 DAZ2Q13117 558 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms