RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 IGLV4-69A0A075B6H9 119 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 FAM240AA0A1B0GVK7 77 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 NDUFA4O00483 81 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 ATP5G1P05496 136 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 INAFM2P0DMQ5 153 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 COX7CP15954 63 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 DAND5Q8N907 189 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 ZNRF2Q8NHG8 242 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 LINC00526Q96FQ7 95 aa8.12□□□□□ -1.11
LSM3-201ENST00000306024 ATRQ13535 2644 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 FBN2P35556 2912 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 RNASE13Q5GAN3 156 aaKnown RBP8.11□□□□□ -1.11
LSM3-201ENST00000306024 NACAE9PAV3 2078 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 IGKV3D-7A0A0C4DH55 119 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 I3L3M4 83 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 BAALC-AS2P0C853 105 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 HIST2H2BDQ6DRA6 164 aa8.11□□□□□ -1.11
LSM3-201ENST00000306024 OVOL1O14753 267 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 DEFB1P60022 68 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 SUMO4Q6EEV6 95 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 UBE2E2Q96LR5 201 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 C1orf43Q9BWL3 253 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 JPT2Q9H910 190 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 TRBV7-7A0A0K0K1E9 115 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 RNASE1P07998 156 aaKnown RBP8.1□□□□□ -1.11
LSM3-201ENST00000306024 HOXD3P31249 432 aaPredicted RBP8.1□□□□□ -1.11
LSM3-201ENST00000306024 ESM1Q9NQ30 184 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 TRAV25A0A0B4J276 109 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 IGHV3-30-3P0DP02 117 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 HRCT1Q6UXD1 115 aa8.1□□□□□ -1.11
LSM3-201ENST00000306024 CRYGDP07320 174 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 TMEM89A2RUT3 159 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 CLPSL1A2RUU4 121 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 IGHV4OR15-8A0A075B7B6 117 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 A0A087WW49 117 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 F6UB75 175 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 LST1O00453 97 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 LINC01006Q8NI28 216 aa8.09□□□□□ -1.11
LSM3-201ENST00000306024 TMEM223A0PJW6 202 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 PSMB8P28062 276 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 SLURP1P55000 103 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 UNQ9165/PRO28630Q6UXU0 137 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 COPS9Q8WXC6 57 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 CITED2Q99967 270 aaPredicted RBP8.08□□□□□ -1.12
LSM3-201ENST00000306024 C9orf47Q6ZRZ4 202 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 DSCR8Q96T75 97 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 IGLV1-40P01703 118 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 SNRPD3P62318 126 aaKnown RBP8.08□□□□□ -1.12
LSM3-201ENST00000306024 KRTAP1-1Q07627 177 aa8.08□□□□□ -1.12
LSM3-201ENST00000306024 IGIPA6NJ69 53 aa8.07□□□□□ -1.12
LSM3-201ENST00000306024 DAZ2Q13117 558 aaKnown RBP8.07□□□□□ -1.12
LSM3-201ENST00000306024 SDIM1Q6ZPB5 146 aa8.07□□□□□ -1.12
LSM3-201ENST00000306024 DAZ4Q86SG3 579 aaKnown RBP8.07□□□□□ -1.12
LSM3-201ENST00000306024 DAZ3Q9NR90 486 aaKnown RBP8.07□□□□□ -1.12
LSM3-201ENST00000306024 IGHV4-4A0A075B6R2 117 aa8.07□□□□□ -1.12
LSM3-201ENST00000306024 IGHV3-73A0A0B4J1V6 119 aa8.07□□□□□ -1.12
LSM3-201ENST00000306024 CCL24O00175 119 aa8.07□□□□□ -1.12
LSM3-201ENST00000306024 PRR9Q5T870 116 aa8.06□□□□□ -1.12
LSM3-201ENST00000306024 RNF152Q8N8N0 203 aa8.06□□□□□ -1.12
LSM3-201ENST00000306024 TSHBP01222 138 aa8.06□□□□□ -1.12
LSM3-201ENST00000306024 MRPL53Q96EL3 112 aaKnown RBP8.06□□□□□ -1.12
LSM3-201ENST00000306024 ZNF580Q9UK33 172 aa8.06□□□□□ -1.12
LSM3-201ENST00000306024 MIAQ16674 131 aa8.05□□□□□ -1.12
LSM3-201ENST00000306024 LENEPQ9Y5L5 61 aa8.05□□□□□ -1.12
LSM3-201ENST00000306024 MAST4O15021 2626 aa8.05□□□□□ -1.12
LSM3-201ENST00000306024 F8W735 103 aaPredicted RBP8.05□□□□□ -1.12
LSM3-201ENST00000306024 GPHB5Q86YW7 130 aa8.05□□□□□ -1.12
LSM3-201ENST00000306024 C18orf65Q6ZTR6 163 aa8.04□□□□□ -1.12
LSM3-201ENST00000306024 TMEM258P61165 79 aa8.04□□□□□ -1.12
LSM3-201ENST00000306024 HIVEP1P15822 2718 aa8.04□□□□□ -1.12
LSM3-201ENST00000306024 TMEM61Q8N0U2 210 aa8.03□□□□□ -1.12
LSM3-201ENST00000306024 C4orf3Q8WVX3 66 aa8.03□□□□□ -1.12
LSM3-201ENST00000306024 ZFAND3Q9H8U3 227 aa8.03□□□□□ -1.12
LSM3-201ENST00000306024 SETXQ7Z333 2677 aaKnown RBP8.03□□□□□ -1.12
LSM3-201ENST00000306024 A8MZ25 164 aa8.03□□□□□ -1.12
LSM3-201ENST00000306024 PRIMA1Q86XR5 153 aa8.03□□□□□ -1.12
LSM3-201ENST00000306024 POLR2KP53803 58 aaKnown RBP8.02□□□□□ -1.13
LSM3-201ENST00000306024 C20orf203Q8NBC4 194 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 Q9HAA7 133 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 IGHV1-58A0A0C4DH39 117 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 NXPH4O95158 308 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 COX7A2LO14548 114 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 CRPP02741 224 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 RPL18AQ02543 176 aaKnown RBP8.02□□□□□ -1.13
LSM3-201ENST00000306024 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.02□□□□□ -1.13
LSM3-201ENST00000306024 KIR2DL5BQ8NHK3 375 aa8.02□□□□□ -1.13
LSM3-201ENST00000306024 TINCRA0A1B0GVN0 87 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 ZFAND2AQ8N6M9 145 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 C4orf26Q17RF5 130 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 K7EMT4 169 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 TIRAPP58753 221 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 ADAMTSL4-AS1Q5T5F5 129 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 SERP2Q8N6R1 65 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 TMEM243Q9BU79 118 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 Q9H8V8 135 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 PKIGQ9Y2B9 76 aa8.01□□□□□ -1.13
LSM3-201ENST00000306024 CFHR3Q02985 330 aa8□□□□□ -1.13
LSM3-201ENST00000306024 C19orf54Q5BKX5 351 aa8□□□□□ -1.13
LSM3-201ENST00000306024 IGLV4-3A0A075B6K6 122 aa8□□□□□ -1.13
LSM3-201ENST00000306024 CXCL5P42830 114 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 144 ms